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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAGTGGGAAGATACATATGCTCAGCACACTCAATCCAAGCTCAAGCTTTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaactccatttgactaaggccttaccttagaatcatgaaaaatactagtgagaaaaatggtgtctgtacttgcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00630.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728908|gb|EE104890.1|EE104890
EST:     TTAACAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAG                         TTA-ATTGGAGATGAGAAGGA
genomic: TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaa ... gtacttgcagTTACATTGAAGATGAGAAGGA
EST: gi|27755297|gb|CB036052.1|CB036052
EST:     TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAG                         TTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
genomic: TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaa ... gtacttgcagTTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
EST: gi|30321227|gb|CD004489.1|CD004489
EST:     TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAG                         TTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
genomic: TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaa ... gtacttgcagTTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
EST: gi|110393215|gb|EC958298.1|EC958298
EST:     TTAGCAGAGAAGTTGAAGGGCATGTATCCTAACTACAACTACCCTAAAAG                         TTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
genomic: TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaa ... gtacttgcagTTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
EST: gi|30320733|gb|CD003995.1|CD003995
EST:     TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAG                         TTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
genomic: TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaa ... gtacttgcagTTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
EST: gi|110420063|gb|EC986324.1|EC986324
EST:     TTAGCAGAGAAGTTGAAGGGCATGTATCCTAACTACAACTACCCTAAAAG                         TTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG
genomic: TTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaa ... gtacttgcagTTACATTGAAGATGAGAAGGATGTTGAGTTAAGTTCAGAGAAGTTGCAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCAGTGGGAAGATACATATGCTCAGCACACTCAATCCAAGCTCAAGCTTTAGCAGAGAAGTTGAAGGGCATGTATCCCAACTACAACTACCCTAAAAGgtaagttcaactccatttgactaaggccttaccttagaatcatgaaaaatactagtgagaaaaatggtgtctgtacttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG