Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgatttcattttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00190.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g09460.1 (Oryza sativa), 5'ss of exon 5
GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgatttcattttctttggctttttttttttttttttttttttttgtctataaa--atttcattaccaaattaccatttacttggtttttattgttgtgcag
| || ||||||||||||||||| || ||||| ||||||||||||||    || |||||    || | |  ||  |   || ||||     | |   |||| |      | |   |    | ||  ||||||   | | |||   ||  |||| |      
GACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTGACgtatgtgttccctaatccctacattcttttccccatgtcaattttctcccaagtgagccaacaaaatattaaattagattcttctt---ttgcattgcttcag--

upper sequence: Vv18s0122g00190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G141241_T03 (Zea mays), 5'ss of exon 3
GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgatttcattttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcag
| || ||||||||||||||||| |||||||| ||||||||||||||    || | |||    | |    | ||||     |  |||   ||   ||||  | |||| |    || |   || ||  |   |  || | |  |                
GACCTGATGACATGCCAGCACATATCAAATCATCAATGTTTGGTTGTTCCCTGATgta----tgtagactcctttca---tcctttccattaacttttgatgtgtccaagttatatttataacacttggtctattgcctcat----------------

upper sequence: Vv18s0122g00190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G890647_T02 (Zea mays), 5'ss of exon 3
GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgatttcattttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcag
| || ||||||||||||||||| |||||||| ||||||||||||||    || | |||    | |    | ||||     |||   ||   ||||  | | |      || | ||  |  ||    |  | |||  ||  |                 
GACCTGATGACATGCCAGCACATATCAAATCATCAATGTTTGGTTGTTCCCTGATgta----tgtagactcctttcatcctttccattaacttttgatgtgtccaagttatatttataacacttggt--ctattgcctcag-----------------

upper sequence: Vv18s0122g00190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 4
GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgta-atgatttc--attttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcag
| || ||||||||||||||||| || |||||||| |||||||||||    || |||||  |||||||  | ||  | |  |||   |   || | || || || |  | | || || ||  ||| ||  || |   || ||   |                
GACCTGATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatttctcacttcttatttcttccctccattatgttattcttctactgtgtagaagttt-ttaacagtttgcatcttgctctatgcag------------

upper sequence: Vv18s0122g00190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ07697 (Selaginella moellendorffii), 5'ss of exon 5
GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgatttcattttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcag
| |||||||||||||| ||||||||||| || ||||||||||| |||    ||||||||        |||  | ||| |||| |  | |     | |   ||  ||| |    | | ||| |    || |  |||||                     
GCCCGGATGACATGCCCGCACACATCAAGTCGTCAATGTTTGGCTGCTCGGTCACgtaa-------gtttgttctggtttttgtcgtgtgagggtgtggattgttctttgc--tcttattgc----ttgctctttacag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30329651|gb|CD012913.1|CD012913
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26262702|gb|CA813765.1|CA813765
EST:     GATGACATGCCAGCACACATCAAATCTTCAAAGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110387568|gb|EC952248.1|EC952248
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110398891|gb|EC965370.1|EC965370
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|351014365|gb|FQ437367.1|FQ437367
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110425437|gb|EC991822.1|EC991822
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110386869|gb|EC951501.1|EC951501
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|71857030|gb|DT006085.1|DT006085
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAGG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAGG
EST: gi|110732164|gb|EE107221.1|EE107221
EST:     GATGACATGCCANCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26257553|gb|CA808616.1|CA808616
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959343|gb|CB339672.1|CB339672
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGCCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26258319|gb|CA809382.1|CA809382
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|254916144|gb|GR904002.1|GR904002
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959153|gb|CB339578.1|CB339578
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGCCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|30301103|gb|CB977897.1|CB977897
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|26257283|gb|CA808346.1|CA808346
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|71856841|gb|DT005896.1|DT005896
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAAACATGGGAACTTGGCAGG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAA-CATGGGAACTTGGCAGG
EST: gi|110426779|gb|EC993200.1|EC993200
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110711159|gb|EE087374.1|EE087374
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGTTAAACATGGGAACTTGGCAA
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110425239|gb|EC991621.1|EC991621
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|110379372|gb|EC944560.1|EC944560
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|30301035|gb|CB977829.1|CB977829
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28960863|gb|CB340439.1|CB340439
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959155|gb|CB339579.1|CB339579
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGT-GCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|30137614|gb|CB922952.1|CB922952
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
EST: gi|28959315|gb|CB339658.1|CB339658
EST:     GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGT-GCAGTCTCAC                         GATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG
genomic: GATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgtaatgattt ... tgttgtgcagGATTCCAATTACTGATGGACAGCTAAACATGGGAACTTGGCAG