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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCGTTCGCGAGGCTTTGGATTTATAATATTTGAAAGTGAAGAGGTAGTAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatactccaatggtccccgagaaataagcatgtaattgaaaacctgtttagaatggagtatgcagcactgcattctctattttccttaatactat...

Basic information

species Vitis vinifera
transcript Vv18s0117g00150.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407717|gb|CF213344.1|CF213344
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAG                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATG
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATG
EST: gi|110712411|gb|EE090004.1|EE090004
EST:     TAGATGAAATATTGTCGGAAGGGAATATGATTGATATGGCAGGCACTCAG                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|110719186|gb|EE096875.1|EE096875
EST:     AGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCNAGGCACTCAG                         GTGGAGATCA-GAAAGCTGA
genomic: AGATGAAATATTGTCGGAGGGGAATATGATTGATATGGC-AGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGA
EST: gi|71873142|gb|DT022197.1|DT022197
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAG                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|161721778|gb|FC071127.1|FC071127
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAG                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|351030617|gb|FQ437043.1|FQ437043
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAA                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCCCCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|351027170|gb|FQ440038.1|FQ440038
EST:     TAGATGAAATATTGTCGGAGGGGACTATGATTGATATGGCAGGCACTCAG                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|110710940|gb|EE087573.1|EE087573
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAA                         GTGGAGATCAAGAAAGCTGAACCANAGAAAGCCTCAAACCCACCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|351045405|gb|FQ447670.1|FQ447670
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAG                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|351039455|gb|FQ461322.1|FQ461322
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAG                         GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTT
EST: gi|110707058|gb|EE083127.1|EE083127
EST:     TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAG                         GTGGAGATTCA-GAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGT
genomic: TAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatac ... tttgttgtagGTGGAGAT-CAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACCGTTCGCGAGGCTTTGGATTTATAATATTTGAAAGTGAAGAGGTAGTAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGgtgagcatactccaatggtccccgagaaataagcatgtaattgaaaacctgtttagaatggagtatgcagcactgcattctctattttccttaatactat

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa