Sequence
atgc intronic sequence ATGC exonic sequenceGAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtgcttgcatttccacttatgaataagtttttttatggctttcttttgctaactcaaatgcagctcgaagaggtaacttgtgcttgcatttcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 5
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtgcttgcatttccacttatgaataagtttttttatggctttcttttgctaactcaaatgcagctcgaagaggtaacttgtgcttgcatttcc---
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GAACTATACCATGAAATGCATGCACTGGATAGATTTGAACAAGATTATCAGCGCAAACAGCAGGAAGAGGATGGTTCAAGTGTACACCAAAGAGgttagt-gtgtttgcatgataatatataagaatgacctgtaagagccgtatgtga--aactcctcggttggccgaaaaacagttttcttcaaaggtggatgct
upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 6
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtgcttgcatttccacttatgaataagtttttttatggctttcttttgcta-actcaaatgcagctcgaagaggtaacttgtgcttgcatttcc
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GAATTATATCATGAATTGCATACTTTGGATAGATTTGAACAAGACTGTCGTCGTAAACAGCAAGAACTGGATGGTTTGGGTTCAA------GAGgtcagttttgtttctgttttatgaactgtacttaaactcatgtggcctgactgcactataaacaactttgtgtgtcatatgaaacactcagctccagttc-
upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G077621_T01 (Zea mays), 5'ss of exon 5
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtgcttgcatttccacttatgaataagtttt--tttatggctttcttttgctaactcaaatgcagctcgaagaggtaacttgtgcttgcatttcc
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GAATTATATCATGAATTGCATGCTTTGGATAGATTGGAACATGATTATCGCCTTAAACAGAAAGAACAGGATGGCTTGAGTTTAA------GAGgttagttttatcaac--ttcaaatgaggaattaaataaaaattatggctgcagtaacttgtctcagattctgctcaatttccacgggcatttaagcagtagg
upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 5
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtgcttgcatttccacttatgaataagtttt--tttatggctttc--ttttgct-aactcaaatgcagctcgaagaggtaacttgtgcttgcatttcc
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GAATTATATCATGAATTGCATGCTTTGGATAGATTGGAACATGATTATCGCCTTAAACAAAAAGAACATGATGGTTTGAGTTTAA------GAGgttagttttatcaac--ttcaaatgaggaattaaataaaaattatggcttcaaattctgctcaatttccacgggcatttaagcagtaggatata---aaattctg
upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 5
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtgcttgcatttccacttatgaataagttttt-ttatggctttcttttgctaactcaaatgcagctcgaa---gaggtaacttgtgcttgcatttcc
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GAATTATATCATGAATTGCATGCTTTGGATAGATTTGAGCATGATTGTCGTCTTAAACAGAAAGAACAGGATGGCTTGAGTTCAA------GAGgtcagtttcatcaac-ttcaaatacggaactaaataaatattatggctgtagcat---aaacaaattgtgtctcagattctgctcaatttccacaggcatttaa
upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 8
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgta-acttgtgcttgcatttccacttatga-ataagtttttttatggctttcttttgctaactcaaatgcagctcgaagaggtaacttgtgcttgcatttcc-
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GAATTATACCATGAATTGCATGCCTTAGACAGATTTGATCAAGATTATCGGCGCAAGCTTCAAGAAGAGGACAATTCAAATGCTACACAAAGAGgtacatgttggcctgtattt--acttaaaatatgaggaaaaatgaatattatatctgataattgaaa-actgtacaatgaggattacaatacatacaagcttt
upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 8
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgta-acttgtgcttgc-atttccacttatgaataagtttttttatggctttcttttgctaactca-aatgcagctcgaagaggtaacttgtgcttgcatttcc
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GAATTATATCATGAATTGCATGCCTTAGATAGATTTGATCAAGATTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAGgtataaaaatgaatattatttctgataattgaaactgtacaacatccctcccccataccttcgcatagcgaagagcctctgggcaa-tggggtacgaagtt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352781806|gb|FQ469104.1|FQ469104EST: TTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAG GGGATAGCCTTGCACTCTTAAGGGCAGAGTTAAAGAGTCAAAGGAAGCATG
genomic: TTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtg ... ttttatgtagGGGATAGCCTTGCACTCTTAAGGGCAGAGTTAAAGAGTCAAAGGAAGCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTATATCATGAGTTGCATGCCTTGGACAGATTTGAACAAGATTATCGGCGCAAGCTTCAGGAAGAGGATAACTCGAATGCAGCTCAACGAGgtaacttgtgcttgcatttccacttatgaataagtttttttatggctttcttttgctaactcaaatgcagctcgaagaggtaacttgtgcttgcatttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggtaa