1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGTATAACCATAGTATTATAGATCAGCAGTTTGCATTCTACCAGGCTGATGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCAgtatgattttgttcaagaatctctctattttttatgctaaatttgcagcttgcatctattgtttccacagctttctttatttgtttgctctattgacag
species | Vitis vinifera |
transcript | Vv18s0072g01020.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGGCTGAAAAGATTCAATGCNTCAGATCCTAACAAGCTTCTTCCCAGCA ATGTTCCTGAAGGATCTTTTATTGTCAGAGCACACACTCCAATGTCAAACTEST: gi|26262106|gb|CA813169.1|CA813169
genomic: TGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCAgtatgatttt ... ctattgacagATGTTCCTGAAGGATCTTTTATTGTGAGAGCACACACTCCAATGTCAAACT
EST: GGGCTGGAAAGA-TCAATGCCTCAGANT-CTAACAAGC-TCTTCCCAGCA ATGTTCCTGAAGGATCTTTTATTGTGAGAGCACACACTCCAATGTCAAACTEST: gi|32248777|gb|CD714596.1|CD714596
genomic: GGGCTGAAAAGATTCAATGCCTCAGA-TCCTAACAAGCTTCTTCCCAGCAgtatgatttt ... ctattgacagATGTTCCTGAAGGATCTTTTATTGTGAGAGCACACACTCCAATGTCAAACT
EST: TGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCA ATGTTCCTGAAGGATCTTTTATTGTCAGAGCACACACTCCAATGTCAAACTEST: gi|18458392|gb|BM436670.1|BM436670
genomic: TGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCAgtatgatttt ... ctattgacagATGTTCCTGAAGGATCTTTTATTGTGAGAGCACACACTCCAATGTCAAACT
EST: TGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCA ATGTTCCTGAAGGATCTTTTATTGTCAGAGCACACACTCCAATGTCAAACT
genomic: TGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCAgtatgatttt ... ctattgacagATGTTCCTGAAGGATCTTTTATTGTGAGAGCACACACTCCAATGTCAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTATAACCATAGTATTATAGATCAGCAGTTTGCATTCTACCAGGCTGATGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCAgtatgattttgttcaagaatctctctattttttatgctaaatttgcagcttgcatctattgtttccacagctttctttatttgtttgctctattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT