Sequence
atgc intronic sequence ATGC exonic sequenceATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcaggcaattcttctttttcattatcagcatcatgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g07020.1 (Oryza sativa), 5'ss of exon 5
ATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcg-----tcaggcaattcttctttttcatta-tcagcatcatgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa
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ATTCCAGTTGAGAAGCTGTTAGTTCATGATGTACCAGTTGACATTATCTGCACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgtatgaatgattgtattatttaatattttggtaaaccggcaaaaaaaccttatgtgaccagatttttggggaacttctgcatgcag--------------------
upper sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G001904_T01 (Zea mays), 5'ss of exon 3
ATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcaggcaattcttctttttcattatcagcatca--tgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa
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ATTCCAGTGGAGAAGCTGCTAGTTCATGATGTGCCAGTTGACATTATCTGCACCCCTACTCAGGTCATCTTCACGAAGACTACGATCCCAAAGCCACAAGgttcgg-agatttttgtgtgcagtgatttcctctacgaattagtcttatgtgaccaaatatt--ggagaattttatatgcag--------------------
upper sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G27960.1 (Glycine max), 5'ss of exon 5
ATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcaggcaattcttctttttcattatcagcatcatgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa-
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ATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGgttggttaaacaatgctgctatc-cagtacctatttgacttcacattttattattaccttttaatctgtaaatcattgagacgcccttgcaaagatgtaat
upper sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G08860.1 (Glycine max), 5'ss of exon 6
-ATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcaggcaattcttctttttcattatcagcatcatgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa
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TATTCCTGTTGAAAAGCTGTTAATCCATGACGTACCAGTGGATATCATTTGTACTCCAACACAGGTCATTTTCACAAATACATTTATGCCAAAGCCTCAAgtttggttaaacaatgctatctagtacctatc-------tgacttcac--------attttcttattaccttttaatctgtaaatcattgagaag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385632|gb|EC950176.1|EC950176EST: CACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAG GGATCTACTGGGACAAATTATCTCCTGAGAAGCTTGGTCAAATTCGAATAC
genomic: CACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcagg ... gtgagtgcagGGATCTACTGGGACAAATTATCTCCTGAGAAGCTTGGTCAAATTCGAATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCCTGTTGAGAAGCTGTTAATCCATGACGTGCCAGTTGATATTATATGCACCCCAACCCAAGTCATTTTTACCAACACCTCAATCCCAAAGCCTCAAGgttcgtcaggcaattcttctttttcattatcagcatcatgactctgaggagcaggatgttcagacaaacctgatgcccatgtgaccttgaaactgtcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agacaaa