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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGTAGAGTACATGCCCTTCTTCTTATCACTGTTCGTGTTCCTCTGCGGTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgcttggtccttgtcgaggtttgcctatgtggtggggaattacccaatttgtagtttaatcaagcgggacattatatggtgctgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g15330.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G42040.1 (Glycine max), 5'ss of exon 5
GAGTGTAGAGTACATGCCCTTCTTCTTATCACTGTTCGTGTTCCTCTGCGGTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaag-cgcttggtccttgtcgaggtttgcc--tatgtggtggggaattacccaatttgtagtttaatca-------agcgggacattatatggtgctgcag--------------------------
|||||| |||| ||||||||||||||| || ||||| || || |||||||| |||||||||||| ||||||| || || ||    ||||| ||||| || ||||| | ||| |   || |  |  |       ||  | ||     |||    | || | |||  | |         |     |  ||| || ||     ||                          
GAGTGTGGAGTTCATGCCCTTCTTCTTGTCTCTGTTTGTTTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaatt-ttaacttacaatggtacatagtttcatatttatta-ttggcagtgcagtggcatagacaataaaatgttacatagtttcatagtttcatattcatgtatggtttttcag

upper sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G12740.2 (Glycine max), 5'ss of exon 5
GAGTGTAGAGTACATGCCCTTCTTCTTATCACTGTTCGTGTTCCTCTGCGGTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaag-cgcttggtccttgt----cgaggtttgcctatgtggtggggaattacccaatttgtagtttaa--tcaagcgggacattatatggtgctgcag-
|||||| |||| ||||||||||||||| || ||||| ||||| ||||| || |||||||||||| ||||||| || || ||    ||||| ||||| || ||||| | ||| |   || |      |   |||   ||   |  |||    |    |   ||  | |||  ||   | || |    | ||   | | |  
GAGTGTGGAGTTCATGCCCTTCTTCTTGTCGCTGTTTGTGTTTCTCTGTGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaattttaacttaacaattgtgcatagagctggggcaaaatggaccggtcctgtaaggtcggcctgggctgagtttgaatcagaaaa

upper sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G27610.1 (Glycine max), 5'ss of exon 5
GAGTGTAGAGTACATGCCCTTCTTCTTATCACTGTTCGTGTTCCTCTGCGGTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaag---cgcttggtccttgtcgaggttt-gcctatgt---ggtggggaattacc---caatttgtagtttaatcaagcgggac--attatatggtgctgcag--------------------
||| || |||| ||||||||||||| | ||||| || ||||||||||| |||||||| |||||  |||  || ||||| ||    ||||| ||||| || |||||   | |     | || || | ||||   | || |     |||   | |||    ||||    | | | |  |      ||  |   | | | | ||||                     
GAGCGTGGAGTTCATGCCCTTCTTCCTCTCACTCTTTGTGTTCCTCTGTGGTACTTCTTGGTTCATCTACGGGCTACTAGGCCGTGACCCATTTGTGGCTgtaagtagcacactaacattatccacgttttatcaattttcaattggatcaatacaatacaatacaaattgtcactattttaaacttaccctcttgggttgcaattggcttgtattgaacgtag

upper sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G21460.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGTGTAGAGTACATGCCCTTCTTCTTATCACTGTTCGTGTTCCTCTGCGGTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgcttggtccttgtcgaggtttgcctatgtggtggggaattacccaatttgtagtttaatcaagcgggacattatatggtgctgcag
|||||||||||  ||||| ||||| || ||||| || || |||||||| |||||||| ||||| |||| ||| ||| |||||   ||||| ||||| || |||||       | ||  |    || |   | | |  | || || || | ||  | |  ||     ||    |   || | | ||   | ||
GAGTGTAGAGTTTATGCCATTCTTTTTGTCACTCTTTGTCTTCCTCTGTGGTACTTCGTGGTTCGTCTATGGTCTAATCGGTCGTGACCCTTTTGTTGCAgtaagttacaatttctccttcttgtgttgttttct--ttggtaaatatcaaaactttgtttc---taactttgggtttttgttgttgcgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110731976|gb|EE106858.1|EE106858
EST:     GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCG                         GTGCCGAACGGCTTTGGGTGCGGCCTANGGGCGATGCACCTGATACTGTAC
genomic: GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgctt ... ggtgctgcagGTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
EST: gi|110387851|gb|EC952549.1|EC952549
EST:     GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCG                         GTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
genomic: GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgctt ... ggtgctgcagGTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
EST: gi|33403642|gb|CF209269.1|CF209269
EST:     GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCG                         GTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
genomic: GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgctt ... ggtgctgcagGTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
EST: gi|30320705|gb|CD003967.1|CD003967
EST:     GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCG                         GTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
genomic: GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgctt ... ggtgctgcagGTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
EST: gi|110374121|gb|EC938672.1|EC938672
EST:     GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCG                         GTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
genomic: GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgctt ... ggtgctgcagGTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC
EST: gi|110699794|gb|EE077102.1|EE077102
EST:     GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTANAGACCCCTTTGTCGCG                         GTGCCGAACGGCTTTGGGTGCGGCCTANGGGCGATGCAGCTGATACTGTAC
genomic: GTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaagcgctt ... ggtgctgcagGTGCCGAACGGCTTTGGGTGCGGCCTAGGGGCGATGCAGCTGATACTGTAC