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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctgcttcagtatcaccaaccatcttctgttatgtcaatcagctgtttctttgagaaagtattgaaagcaatcatcttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g14450.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 4
GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctgcttcagtatcaccaaccatcttctgttatgtcaatcagctgtttctttgagaaagtattgaaagcaatcatcttgcag
||||||||||||||||  |||||||||| || || ||||| || || ||||||||||| ||||| |||||||| ||||| | | | ||||||||||| |    ||  | ||    ||        | | |    ||||  |     |    |      |      ||  | | |||||||
GTGACTTGAAGCCTGGTTCTGATGTCAAGATAACCGGACCAGTAGGCAAAGAAATGCTCATGCCCAAAGATCCCAATGCTAATATTATAATGgtgagcttaaatt--gcatggtgaattgatccatctcaaaa-aatctac-accacaacaaattttaaccttgtgcggtta-cttgcag

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 5
GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctgcttcagtatcaccaaccatcttctgttatgtcaatcagctgtttctttga-----gaaagtattgaaagcaatcatctt-gcag
||||| ||||||| || ||||| || | ||| || |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||   ||  | |  |  |  |  |       | ||| |||   || |  |||| || |||        | |  | |  | |||  ||||  |||
GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACCATCATCATGgtacatt--gatagaaaacgaata--tggtatatgtgatggtcatga-ttgttgctctgatcttcaccattgatcattgaaattttcttcacag

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G23710.1 (Glycine max), 5'ss of exon 5
GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctgcttcagtatcaccaaccatcttctgttatgtcaatcagctgtttctttga-----gaaagtattgaaagcaatcatctt-gcag
||||| ||||||| || ||||| || | ||| || |||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||   ||    |  |  |  |  |       | ||| |||   || |  |||| || |||        | |  | |  | |||  ||||  |||
GTGACCTGAAGCCAGGAGCTGAAGTAACAATAACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCATCATCATGgtacatt--aatagaaaacgaata--tggtatatgtgatggtcatga-ttgttgctctgatcttcaccattgatcattgaaattttcttcacag

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G08230.1 (Glycine max), 5'ss of exon 5
GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctgcttcagtatcaccaaccatcttctgttatgtcaatcagctgtttctttgagaaagtattgaaagca--atcatcttgcag-----------------------------------------------
| ||||||||||| || || || || || || || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||      | |   |   ||  || |    ||     | |   ||        | | | | | |||  | ||  ||  ||     |   |                                               
GCGACTTGAAGCCAGGAGCCGAAGTAAAGATTACTGGACCTGTTGGTAAAGAAATGCTTATGCCAAAAGATCCTAATGCAACCGTCATCATGgtacacattacccaaccgtcttcatcttaattgaaaaaggaatatttaaatcctttcttatatagtcataaattcatgattgctgttttgattttcaccattaccattgatgattataattttttttccatatatag

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtg-agttctgcttcagtatcaccaaccatcttctgttatgtcaatcagctgtttctttgagaaagtattgaaagcaatca-tcttgcag--------------
||||||||||||| || | ||| |  || ||||| ||||||||||| || |||||||||||||||||||| || ||||||||  |||| |||||   ||  |   |  |  |   ||   |  ||          | | ||  || | |   ||  |  | |   ||  || | |  |||                
GTGACTTGAAGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGGCAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGgtatggtcatatattggcgtgctcacttagattagagagcagaatttagtggtatat---agtcaacacttgtagtgattacttctgcttttctgtttccttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372040|gb|EC936182.1|EC936182
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|32268295|gb|CD717454.1|CD717454
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351024744|gb|FQ430569.1|FQ430569
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351046424|gb|FQ453040.1|FQ453040
EST:     TGGGAAAGAAATGCTTATGCCAAAAGATCCAAAATGC-ACTGTCATAATG                         CTTGCAACTGGTACTGGCCTTGCTCCTTTTCGCTCATTCTGG-GGAAAATG
genomic: TGGGAAAGAAATGCTTATGCCAAAAGATCCAAA-TGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351044400|gb|FQ452952.1|FQ452952
EST:     TTGGGAAAGAAATGCTTATGCCCAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCCTTTCGCTCATTCTTGTGGAA
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAA
EST: gi|351045818|gb|FQ441003.1|FQ441003
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTAATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|37187297|gb|CF606650.1|CF606650
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351052122|gb|FQ455415.1|FQ455415
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351042242|gb|FQ442709.1|FQ442709
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351032748|gb|FQ462462.1|FQ462462
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351019671|gb|FQ439488.1|FQ439488
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351055385|gb|FQ441983.1|FQ441983
EST:     TTGGGAAAGAAAAGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349825116|gb|FQ415663.1|FQ415663
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351039066|gb|FQ457741.1|FQ457741
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAA-G
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|30328071|gb|CD011333.1|CD011333
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351057238|gb|FQ450945.1|FQ450945
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|33404726|gb|CF210353.1|CF210353
EST:     TTGGGAAAGAAATGCTTATGCCAAAGGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351044758|gb|FQ449012.1|FQ449012
EST:     TTGGGAAAGAAAAGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349816231|gb|FQ403727.1|FQ403727
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351055701|gb|FQ452166.1|FQ452166
EST:     TTGGGAAAGAAAAGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351035786|gb|FQ463631.1|FQ463631
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349811497|gb|FQ409493.1|FQ409493
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGC
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGC
EST: gi|349814907|gb|FQ410130.1|FQ410130
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351045587|gb|FQ440772.1|FQ440772
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351053728|gb|FQ441494.1|FQ441494
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351056890|gb|FQ443517.1|FQ443517
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349825028|gb|FQ415575.1|FQ415575
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCCTAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351053267|gb|FQ459135.1|FQ459135
EST:     TGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACCTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCCTTTCGCTCATTCTTGTGGAAAATG
genomic: TGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCAC-TGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351025508|gb|FQ435201.1|FQ435201
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|30325352|gb|CD008614.1|CD008614
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351044587|gb|FQ443118.1|FQ443118
EST:     TTGGGAAAGAAAAGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTTC-CTCATTCTTATGGAAAAT
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTT-CGCTCATTCTTGTGGAAAAT
EST: gi|110371343|gb|EC935294.1|EC935294
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351045767|gb|FQ440952.1|FQ440952
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349829231|gb|FQ419763.1|FQ419763
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349810724|gb|FQ402967.1|FQ402967
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGGCA-CTGGTACTGGCATTGCTCCTTTTCGCTCA
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTG-CAACTGGTACTGGCATTGCTCCTTTTCGCTCA
EST: gi|349812990|gb|FQ411230.1|FQ411230
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         TTTGAAACTGGTACTGGCATTGCTCC
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCC
EST: gi|110379774|gb|EC944993.1|EC944993
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349821990|gb|FQ408319.1|FQ408319
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349825115|gb|FQ415662.1|FQ415662
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351031903|gb|FQ460160.1|FQ460160
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|351040458|gb|FQ434591.1|FQ434591
EST:     TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATG                         CTTGGAACTGGTACTGGCATTGCCCCTTTTCCCTCATT
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATT
EST: gi|349826752|gb|FQ418843.1|FQ418843
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|349817775|gb|FQ407764.1|FQ407764
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAACG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG
EST: gi|352794268|gb|FQ479510.1|FQ479510
EST:     TTGGGAAAGAAATGCTTATGCCAAGAGATCCAAATGCCACTGTCATAATG                         CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTATGGAAAATG
genomic: TTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctg ... catcttgcagCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGgtgagttctgcttcagtatcaccaaccatcttctgttatgtcaatcagctgtttctttgagaaagtattgaaagcaatcatcttgcag

- - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA