Sequence
atgc intronic sequence ATGC exonic sequenceGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattttaagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 5
-GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattt-taagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
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GGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggtcagaatt-----------gtttcatttctgaattccattgtgttttgaga-ttttggttaatctcaaatgtattgtaccttacccttcatgttggtgta---
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G07750.1 (Glycine max), 5'ss of exon 5
GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattttaagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
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GGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAGgtcagaattgt--ttcattt-ctgaattccattgtgttttaaggttttg---tttaatctcaaatgtaatgttccttatcctacatgttggtgtag-------
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G03230.1 (Glycine max), 5'ss of exon 5
GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattttaagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
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GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcaga-ttatgtttcttttataa-attctg---tgtgctttga------agtcttcttcattgtaaaaattattttgtcttccctttat-tctgat--gtag
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G03180.1 (Glycine max), 5'ss of exon 5
GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattttaagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
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GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGgtcaga-ttatgtttcttttataa-attctg---tgtgctttga------agtcttcttcattgtaaaatttattttaccttcccttcat-tctgat--gtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128746|gb|CB914085.1|CB914085EST: CATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAG GTTGTTTCAAGTGCAATAATTGATAAATACAT
genomic: CATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagactta ... tggtttgtagGTTGTTTCAAGTGCAATAATTGATAAATACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattttaagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG