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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATGATGCTGTTAATGCGGAAGCTTTTATTAATAAAGCCTCATTCTTGGTTAGCAACAGTCAGCATGAAGTATTGAATTTACAGTACAAGgttgacactgtttgacagtcaattatgatagttgtgttaaaattttgaatctttagtgtattaactaatttatttttaatacatcccttattgtcag

Basic information

species Vitis vinifera
transcript Vv18s0001g12250.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g10120.3 (Oryza sativa), 5'ss of exon 5
GATGATGATGCTGTTAATGCGGAAGCTTTTATTAATAAAGCCTCATTCTTGGTTAGCAACAGTCAGCATGAAGTATTGAATTTACAGTACAAGgtt-gacactgtttga-cagtcaattatgatagt-tgtgttaaaattttgaatctttagtgtattaactaatttatttttaatacatcccttattgtcag
||||||||| |||||||||| |||||||||||||| ||||| ||||| ||||| |  |||||||| || ||| |  |||| ||||||||||||||| |    || | |  ||||  | |||  | || |   ||||||    ||  ||||    ||||  ||   |  ||||| ||| ||   | |       
GATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGgtttgttgatgctggctcagttcaatatttttgtctacattaaaaca--gacacttttacttattttct---tctttttttatatatatttaag------

upper sequence: Vv18s0001g12250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G00810.1 (Glycine max), 5'ss of exon 6
GATGATGATGCTGTTAATGCGGAAGCTTTTATTAATAAAGCCTCATTCTTGGTTAGCAACAGTCAGCATGAAGTATTGAATTTACAGTACAAGgttgacactgtttgacagtcaattatgatagttgtgttaaaattttgaatctttagtgtattaactaatttatttttaatacatccct---tattgtcag
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||   |     |  | |  ||  | | ||  ||   |||||  | ||  | | ||  |      |   || ||   | |   | |||   | || ||||
GATGATGATGCTGTCAATGCTGAAGCTTTTATTAATAAAGCATCATTCTTGGTCAGCAATAGTCAGCATGAAGTACTGAATTTAAAGTACAAGgtttgaaaatgatagctgctaa--agggtaactgatctaaaagatagatgcgtgagcctgcctcatctgtttttcccatttttttcctatttgttttcag

upper sequence: Vv18s0001g12250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G36550.1 (Glycine max), 5'ss of exon 6
GATGATGATGCTGTTAATGCGGAAGCTTTTATTAATAAAGCCTCATTCTTGGTTAGCAACAGTCAGCATGAAGTATTGAATTTACAGTACAAGgttgacactgtttgacagtcaattatgatagttgtgttaaaattttgaatctttagtgtattaactaatttattttta--atacatcccttattgtcag---
|| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||| |||||||||||   |     |  | |  ||  | | ||   | | | |||   |  ||   | |||  |   || || | |||||   ||   | |||| ||||      
GACGATGATGCTGTCAATGCTGAAGCTTTTATTAATAAAGCATCATTCTTGGTCAGCAACAGTCAGCATGAAGTTCTGAATTTAAAGTACAAGgtttgaaaatgatagctgctaa--agggtaacggagcttaaaagatagatgcct-gtgcctagccttatctgtttttcccattttttcctttttgttttcag

upper sequence: Vv18s0001g12250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G42970.1 (Arabidopsis thaliana), 5'ss of exon 5
GATGATGATGCTGTTAATGCGGAAGCTTTTATTAATAAAGCCTCATTCTTGGTTAGCAACAGTCAGCATGAAGTATTGAATTTACAGTACAAGgttgacactgtttgacagtcaattatgatagttgtgttaaaattttgaatctttagtgtattaactaatttatttttaatacatcccttattgtcag
|||||||||||||| ||||| || |||||||| |||||||| || ||||| || ||||| |||||| ||||||| |||||||| |||||||||||||  ||    | | ||| || || || | || |||      |  |    |   | | |||   |  |  | |||||||| ||  ||  ||  |||
GATGATGATGCTGTAAATGCAGAGGCTTTTATAAATAAAGCTTCTTTCTTAGTGAGCAATAGTCAGAATGAAGTTTTGAATTTGCAGTACAAGgttgg-accaccttaaagtaaactaaga-atttatgt----gctgggtgattaaggagcattcgttt-tcaagttttaatatatttctgttt--cag