Sequence
atgc intronic sequence ATGC exonic sequenceCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGGgtgagtagtcacttacagtttttggttgtataaaatattgtgattgttatgtcttgatattaattaggagtcacagaatcctcttcctcagtgtgtggat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 5
CATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGGgtgagtagtcacttacagtttttggttgtataaaatattgtgattgttatgtcttgatattaattaggagtcacagaatcctcttcctcagtgtgtggat-----------------------------------------------
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CCTGTGCTGGCCCTTCAGATGAAATATCTCCTCTGTACTCATTGTGGGCTACATTTGTTGGCCTTTATATTGCTAACTTTGTTGTGGAGAGATCAACTGGgtatgtgtttatt----gttttgcaccgtgcatgttcttattgatgcattaattttcttataatagaagctagtaatatttcctttccaaaaatattgcttgcatacattcagtctttctcttaattatgcactgcgattatttcag
upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 5
CATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGGgtgagtagtcacttacagtttttggttgtataaaatattgtgattgttatgtcttgatattaattaggagtcacagaatcctcttcctcagtgtgtggat-----------
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CCTGTGCTGGCCCATCGGATGAAATCTCTCCTTTGTACTCATTATGGGCTACATTTGTTGGCCTCTATATCGCTAACTTTGTTGTGGAGAGATCAACTGGgtatg------cctttagtttttcacactatacg-tactaag---gtcctgtttggaagcaacctagttttta-agaatctagtttggaaccacgtctgttttcataaacc
upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 4
CATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGGgtgagtagtcacttacagtttttggttgtataaaatattgtgatt-gttatgtcttgatattaattaggagtcacagaatcctcttcctcagtgtgtggat--
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CATGTCCTGGTTCATCAGATGAAATTTCTCCCATCTACTCACTTTGGGCTACATTTATTGGGCTTTACATTGCAAATTATGTGGTGGAGAGGTCAACAGGgtgagtagtactttatagtt---gattttattatgtgctaaactttattatcttcctgcttgtaatatgagtaattgtttttaattgttcaaagtataaaatt
upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 4
CATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGGgtgagtagtcacttacagtttttggttgtataaaatattgtgattgtt-atgtcttgatattaattaggagtcacagaatcctcttcctcagtgtgtggat--
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CATGTCCTGGTTCATCAGATGAAATTTCTCCCATTTACTCACTCTGGGCTACATTTATTGGGCTTTACATTGCAAATTATGTGGTGGAGAGGTCAACAGGgtgagtagtactttatagtt---gattttattatttgctaaattttttcatgttcctgcttgtagtatgagtaattgtttttaattgttcaaagtataaatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254916699|gb|GR905525.1|GR905525EST: ATATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGG ATGGGCTCTTACTCACCCTTTGTCAGTTAAAGATTATGAGGAGTTGAAGAA
genomic: ACATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGGgtgagtagtc ... ctatcaacagATGGGCTCTTACTCACCCTTTGTCAGTTAAAGATTATGAGGAGTTGAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGGTGGAAAGATCATCAGGgtgagtagtcacttacagtttttggttgtataaaatattgtgattgttatgtcttgatattaattaggagtcacagaatcctcttcctcagtgtgtggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc