Sequence
atgc intronic sequence ATGC exonic sequenceAATTACTCCAACGTCTGAACAGCTGGCATCCTTGAATCTGAAGGAAGGAAGGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGgtcacttgttgcttcatttttcaatttctttttctagctctctctctctctcacacacacacacatcttttcctctctgtttttccttgttaccatgctttattgaaatacttgttaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 8
AATTACTCCAACGTCTGAACAGCTGGCATCCTTGAATCTGAAGGAAGGAAGGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGgtcacttgttgcttcatttttcaatttcttttt-------ctagctctctctctctctcacacacacacacatcttttcctctctgtttttccttgt--taccatgctttattgaa-atacttg-ttaacag
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AATGACTCCAACCTCTGAACAGCTAGCCTCGTTGAATCTGAAGGATGGGATGAATACTGTAACCTTCACTTTCTCTACAGCTGTGCTGGGGAAGCAGCAGgtaaataatcatgaatttctataattttattttaagaacatgaagtttacttctcgtttccttttatgtacatttcttcaattgaaatctctcttctacttttattttttattttttatgtttgattaacag
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G04230.2 (Glycine max), 5'ss of exon 9
AATTACTCCAACGTCTGAACAGCTGGCATCCTTGAATCTGAAGGAAGGAAGGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGgtcacttgttgcttcatttttcaatttcttttt-------ctagctctctctctctctcacacacacacacatcttttcctctctg--tttttccttgttaccatgctttattgaa-atacttg-ttaacag
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AATGACTCCAACCTCTGAACAGCTAGCCTCATTGAATCTGAAGGATGGGATGAATACTGTAACCTTCACCTTCTCTACAGCTGTGCTGGGGAAGCAGCAGgtaaataatcatgagtttctatagttttattttaagaacatgaagtttacttctcgtttccttttatgtacatttcttctattgaaaactctcttctacctttatttcttattttttatgtttgactaacag
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G36130.1 (Glycine max), 5'ss of exon 4
AATTACTCCAACGTCTGAACAGCTGGCATCCTTGAATCTGAAGGAAGGAAGGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGgtcacttgttgcttcatttttcaatttctttttctagctctct---ctctctctcacacacacacacatcttttcctctctgtttttccttgttaccatgctttattgaaatacttgttaacag
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--------------------------CATCCTTGAATCTGAAGGAAGGGAGGAACACAATAACCTTCAGTTTCCCTACGGTTAAG---GGGAAGCAGCAGgttagcaatcaataaatttcttcaattttatttcaagtgcgcaaggcttactttc-catttacatttattctgtttcttttattgatacttttaatttt--ttttttatttgtcttactatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714976|gb|FC063946.1|FC063946EST: GGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAG GTTGATGCCAGCATTTATTTGTGGAAATGGA-CACTCGCATAGTA-TCTCA
genomic: GGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGgtcacttgtt ... ttgttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTACTCCAACGTCTGAACAGCTGGCATCCTTGAATCTGAAGGAAGGAAGGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGgtcacttgttgcttcatttttcaatttctttttctagctctctctctctctcacacacacacacatcttttcctctctgtttttccttgttaccatgctttattgaaatacttgttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG