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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGCTCAATTTATATTAACATTCAGAAATTTGTTCAATTTCAGTTGACAGTCAATATCGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAGgtatatagaccctgatgttggctcttgcccattctgtatttatcattttgaatttctgttttgcatgttattcatcttcacctttgttttttgggttgatgtgtggtctcag

Basic information

species Vitis vinifera
transcript Vv18s0001g09150.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32250063|gb|CD715882.1|CD715882
EST:     AGTCAATATAGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAG                         GAAATGCTCCCCTGACCGCGGTTCAGCTTCTGTGGGTCAACATGATTATGG
genomic: AGTCAATATCGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAGgtatatagac ... gtggtctcagGAAATGCTCCCCTGACCGCGGTTCAGCTTCTGTGGGTCAACATGATTATGG
EST: gi|27580854|gb|CB003549.1|CB003549
EST:     AGTCAATATAGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAG                         GAAATGCTCCCCTGACCGCGGTTCAGCTTCTGTGGGTCAACATGATTATGG
genomic: AGTCAATATCGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAGgtatatagac ... gtggtctcagGAAATGCTCCCCTGACCGCGGTTCAGCTTCTGTGGGTCAACATGATTATGG
EST: gi|110689058|gb|EE064960.1|EE064960
EST:     AGTCAATATAGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAG                         GAAATGCTCCCCTGACCGCGGTTCAGCTTCTGTGGGTCA-CATGATTATGG
genomic: AGTCAATATCGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAGgtatatagac ... gtggtctcagGAAATGCTCCCCTGACCGCGGTTCAGCTTCTGTGGGTCAACATGATTATGG