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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGgtacgattggtgagatatttaagtttatccattatatatctcatagtatctgatggaacctttttgaaacag

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G36070.1 (Glycine max), 5'ss of exon 5
---GGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGgtacgattggtgagat---atttaagtttatccattatatatctcatagtatctgatg--gaacctttttgaaacag
     | | |||||||    |||||||||||| ||||| ||||||||||||||  | |||||||| ||||||||||||||||| ||||||  |||     |||   | ||  ||||||     | |        |  |||||||   |     || ||||||||
GGTAAAGACGAGAGGGGTATCTGGCTTCAACAGCTCACGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAGgtaaaattcagatgattctaattttgtttatttgacaaaagcagttcatcatctgatcttgttttcttctgaaacag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G10180.1 (Glycine max), 5'ss of exon 5
---GGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGgtacgatt-ggtgagat-atttaagtttatccattatatatc-tcata-gtatctgatggaacctttttgaaacag
     | | |||||||   ||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| ||||| ||||| ||||||  ||  | |||  |  |||   |||| | || | | ||| ||||  |  |||||||      ||||||  |||
GGGAAAGATGAGAGGGGCACCTGGCTTCAACATCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAGgtaatatcagatgattttgtttttatttaacaataaaaaatcatcatttgattctgatgctgttcttttgatgcag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G37850.1 (Glycine max), 5'ss of exon 5
---GGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGgtacgattggtgagatatttaagtttatccatt----atatatctcatagtatctgatggaacct--ttttgaaacag
     | | || ||||   ||||||||||||| ||||||||||||||||||||  | |||||||  || ||||| |||||||| ||||||  |||     ||| ||||| ||| |  |||    | | |      |  |||||||      |  || ||||||||
GTTAAAGACGACAGGGGTACCTGGCTTCAACAGCTCACATATGGTGTTTTTGGCTTAGGTAACCAGCAGTATGATCATTTTAATAAGgtaaaattcagatgat-tttaattttgtttatttgacaaaaacagttcatcatctgatcatcttttcttctgaaacag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G10200.1 (Glycine max), 5'ss of exon 5
---GGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGgtacgattgg--tgagatatttaagtttatccattatatatctca-tagtatctgatggaacctttttgaaacag
     | | |||||||   ||| ||||||||| ||||||||||| |||||||| ||||||||| | ||||| ||||| ||||| ||||||  ||| |  |   ||||||   ||||   ||   | || ||| | |  |||||||      ||||||  |||
GGGAAAGATGAGAGGGGAACCTCGCTTCAACAGCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAGgtaatattagattatcatatttttatttaatgatagaaaatatcagttgattctgatgctgttcttttgatgcag