1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGAGGGCATCAAAGATTCGCAAACTCTTCAACCTCTCAAAGGATGATGATGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttttaattttatgtctttcaatatgtttaagtactgaagtagcctacattaaaaaagtgggatgctattttaaaagagtattcttgatgtttt...
species | Vitis vinifera |
transcript | Vv18s0001g06290.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110731210|gb|EE109174.1|EE109174
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110398664|gb|EC965135.1|EC965135
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110369359|gb|EC933517.1|EC933517
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|29782562|gb|CB347995.2|CB347995
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110724727|gb|EE100810.1|EE100810
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110694354|gb|EE071389.1|EE071389
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110701201|gb|EE078523.1|EE078523
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|30124734|gb|CB910073.1|CB910073
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GGCAAAA-GTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGEST: gi|110426639|gb|EC993054.1|EC993054
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagG-CAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTG
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110422092|gb|EC988404.1|EC988404
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|28962095|gb|CB341128.1|CB341128
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110729833|gb|EE106221.1|EE106221
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110698432|gb|EE075922.1|EE075922
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|30132967|gb|CB918306.1|CB918306
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110730616|gb|EE107900.1|EE107900
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGAEST: gi|110708627|gb|EE086388.1|EE086388
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
EST: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTG GCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
genomic: TGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttt ... taatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGGGCATCAAAGATTCGCAAACTCTTCAACCTCTCAAAGGATGATGATGTCCGAAAGTATGTCAACACATACCGCAGATCATTCACAACCAAATCTGgtaggttttttaattttatgtctttcaatatgtttaagtactgaagtagcctacattaaaaaagtgggatgctattttaaaagagtattcttgatgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaga