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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTTCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctgtgaatatatttctctggttttgagccctgtgttcacttgatgaaaccatttgaataagattgatttcttaaataatgatttttttttcgt...

Basic information

species Vitis vinifera
transcript Vv18s0001g05720.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g05720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G34760.2 (Arabidopsis thaliana), 5'ss of exon 5
---GATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTTCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctgtgaatatatttctctggttttgagccctgtgttcacttgatgaaacca-tttgaataagattgatttcttaaataatgatttttttttcgt-------
   || || || || ||||| ||||||||||| || || ||||| ||||| |||||  | ||||| ||||| ||||||||||| |||||   |||||| |||||||| |  | | || | ||      |         |   |    |||| || | |  | |||| || | ||  ||   |||    ||  ||||| ||| ||       
CTTGACAGTCTTAACGAAGATTCATACAAGGACAGCACACTTATCATGCAACTTCTCAGAGATAACCTCACTTTATGGACCTCTGATCT---AGAGGAAGGAGgtaagtaat-taaaca-atacacgagacacaacatctctttaaaactttataatagtactttgtattaaatgaatgctttattatatactttttcttttgtcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83277401|gb|DV941409.1|DV941409
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110709573|gb|EE085152.1|EE085152
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351056616|gb|FQ442444.1|FQ442444
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|349828294|gb|FQ416247.1|FQ416247
EST:     TCTTCGGGATAATCTCACATTATGGACCTCTGATCTGCCAGAGGAAGGAG                         GTGAGACATCTAAAGCTGATG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATG
EST: gi|110397825|gb|EC963748.1|EC963748
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351025290|gb|FQ434303.1|FQ434303
EST:     TCTTCGGGATAATCTCACATTATGGACCTTAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110364443|gb|EC924186.1|EC924186
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351054545|gb|FQ452021.1|FQ452021
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTC
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTC
EST: gi|32244981|gb|CD710800.1|CD710800
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGACCCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|34363089|gb|CF404674.1|CF404674
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|30254150|gb|CB971165.1|CB971165
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351012745|gb|FQ430308.1|FQ430308
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAAAA
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|87586625|gb|DY474825.1|DY474825
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110405257|gb|EC970796.1|EC970796
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|27755229|gb|CB035984.1|CB035984
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|32245214|gb|CD711033.1|CD711033
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|71890887|gb|DT039942.1|DT039942
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110392064|gb|EC957212.1|EC957212
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110395364|gb|EC961026.1|EC961026
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110364219|gb|EC923597.1|EC923597
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110701469|gb|EE079073.1|EE079073
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGC
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGC
EST: gi|110424050|gb|EC990403.1|EC990403
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110422906|gb|EC989240.1|EC989240
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110417293|gb|EC983336.1|EC983336
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110419923|gb|EC986180.1|EC986180
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|27580489|gb|CB003184.1|CB003184
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351040928|gb|FQ443704.1|FQ443704
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110370298|gb|EC929339.1|EC929339
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110411588|gb|EC977309.1|EC977309
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|18459307|gb|BM437585.1|BM437585
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|30300606|gb|CB977400.1|CB977400
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351026498|gb|FQ428510.1|FQ428510
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|18458453|gb|BM436731.1|BM436731
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAA
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAA
EST: gi|34549688|gb|CF517920.1|CF517920
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351038901|gb|FQ457576.1|FQ457576
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|30253800|gb|CB971085.1|CB971085
EST:     TCTTCGGGATAATCTCCCATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|30300673|gb|CB977467.1|CB977467
EST:     TCTTCGGGATAATCTCCCATTATGGCCCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGACCCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|352798988|gb|FQ480837.1|FQ480837
EST:     TCTTCGGGATAATCTCACATTATGGACCTTAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|34362955|gb|CF404540.1|CF404540
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|71873026|gb|DT022081.1|DT022081
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|34544771|gb|CF513003.1|CF513003
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110716449|gb|EE091439.1|EE091439
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110368574|gb|EC932559.1|EC932559
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|77587121|gb|DV222691.1|DV222691
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351036204|gb|FQ464049.1|FQ464049
EST:     TCTTCGGGATAATCTCACATTATGGACCTTAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351022476|gb|FQ446998.1|FQ446998
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110401144|gb|EC967739.1|EC967739
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110708397|gb|EE085894.1|EE085894
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|351033022|gb|FQ461911.1|FQ461911
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|30133595|gb|CB918934.1|CB918934
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110715051|gb|EE092660.1|EE092660
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|45770683|gb|CN006535.1|CN006535
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110398286|gb|EC964539.1|EC964539
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
EST: gi|110699231|gb|EE076048.1|EE076048
EST:     TCTTCGGGATAATCTCAC-TTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTNCA-GCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCT-CAAGCAGAG
EST: gi|34319532|gb|CF372286.1|CF372286
EST:     TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAG                         GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG
genomic: TCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctg ... gatttgacagGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTTCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGgtaaatgctgtgaatatatttctctggttttgagccctgtgttcacttgatgaaaccatttgaataagattgatttcttaaataatgatttttttttcgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaataa