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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatctactgcgctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag

Basic information

species Vitis vinifera
transcript Vv18s0001g04980.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 8
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatctactgcgctctgatttgaatgctgagccttttagatttcc--agttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag
||||||||||||||||| || | | | || || |||||||||||||| ||||| ||||| ||||| ||||| |  |||| | | ||| | ||||||      | ||  |   |   |  |     || |   ||      ||||  ||||  |   ||| |  |  | |       ||  ||     || || |||    
GTTCATAATGATGATGAGGTTAGGACATTATTTAAGCAAGTTCAAGGCGAAGTACCTGGTTCCCCAATATTTATCATGAGGCTAGCTGCTCAGgtggggccttttatggaagttacaccttttcccttaatgttgagttattccggagttattatggtt-atgttctgtatgtttgatctgt--aaattattgaaa----

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AC197672.3_FGT002 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatctactgcgctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttatt--ctgacaattcgtttggtttcttcaaactag
||||||||||||||||| || |  ||  |||| |||||||| ||||||||||| ||||||||||| ||||| |  |||| | |||| |||||||| |  || | | ||    |||   | ||||    |  |  |    |||     |  |  ||||  | |  ||||  |||  |  ||   |    | || |||    
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTATCATGAGGCTTGCATCCCAGgttagttttttttct---ttctttctggaatttataatccatccctttttgttcttttaaagttatccttgtattttctggaacatctgatacgctattgaaa----

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G377341_T02 (Zea mays), 5'ss of exon 4
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgata-------------ttatctactgcgctctgatttgaatgctgagcct----------------tttagatttccag----ttgctggagtttacttcttattctgaca--attcgtttggtttcttcaaactag
|||||||| |||||||| || | |||  ||||||||||||||||||| ||||| |||||||| || ||||| |  ||||| || || || ||||||| |             || | | |   | | | || |      |||||||                |||  ||    ||    | | || | | ||  | |  | |||| |  |||| ||  |||  |||    |||
GTTCATAACGATGATGAGGTGAGGGCGCTGTTCAAGCAAGTTCAAGGAGAAGTCCCTGGCTCACCTATATTTATTATGAAAGTGGCATCTCAGgtgagaactgattcaaagattgtttcccttgttttcatgtcggctttgagcctgactctacctttgttctttgtatcatgagcgcttcggtgtaatatatatttgttcctgaaagcattcattctgttctttctttgtag

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgt-gatattatctactgcgctctga--tttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag
||||||||||||||||| || |  ||  |||| |||||||| ||||||||||| ||||||||||| |||||    |||| | |||| ||||||||   | || | |  | |  |||||  |||  || |    ||||||  |  |  |||| |    ||  | ||  |     ||   ||| | || |   ||      | 
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttc-acctttagttacccttgt--attttctg----gaagcttcatctgatgcattattgaca-

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatctactgcgctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag
||||||||||||||||| || | ||| ||||||||||||||||||||||||||||| || || |||||||| |  ||||||||||| |||||||| | || ||| ||||  || |||| ||||||   | | |             ||  ||||||     || ||||||||  ||   ||| ||||||   || |||
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatctttgatctgaatg---aactt-----------gattcttggagtcatggtcgtattctgattatctcttttgtttct---aagtag

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatctactgcgctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag
||||||||||||||||| || | ||| ||||||||||||||||||||||||||||| || || |||||||| |  ||||||||||| |||||||| | || ||| ||||  || |||| ||||||   | | |             ||  ||||||     || ||||||||  ||   ||| ||||||   || |||
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatctatgatctgaatg---aacat-----------gattcttggagtcatggtcgtattctgattatctattttgtttct---aagtag

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G36180.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgata-ttatctac---tgcgctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag
||||||||||||||||| || | |||| | |||||||||||||||||||| || || ||||| || ||||| |  |||||||||||||| ||||| ||   ||  ||    |    | |||| | |||    | |   |||  ||   | |   |||  | | |||  |||  ||   |                       
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAAGGTGAGGTCCCGGGCTCGCCGATATTTATAATGAAGGTTGCTTCACAGgtaatggctacttaactatatcttttgatctcaatat--aactgattaacttagtaatacgtgggatgttctttatatattgtgtag----------------------

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatcta-ctgcg-ctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag---------------------------
||||||||||||||||| || | |||| | |||||||||||||| ||||| || || ||||| || |||||||  ||||||||||| || |||||     |   || ||    ||||   | ||| ||| |||    |   | ||  ||| ||  | |  |    |||   |   ||| | ||   |||||| | | |                             
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaa-gcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag