Sequence
atgc intronic sequence ATGC exonic sequenceTTCTACCGAAGGAAGAACATGCAAACCATTTAATCCATTACTAGGGGAGACCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGgtatgttaaacatttctttctttgtcatctgttgcatacttctcttgacattgtgcctttctgtttgtccctagtaggttaacatggtaatttaatttta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g03790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g49770.2 (Oryza sativa), 5'ss of exon 5
TTCTACCGAAGGAAGAACATGCAAACCATTTAATCCATTACTAGGGGAGACCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGgtatgttaaacatttctttctttgtcatctgttgcatacttctcttgacattgtgcctttctgtttgtccctagtaggttaacatggtaatttaatttta
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ATCTACGGATGGAAGAAGCTGTAAGCCCTTCAATCCACTTCTTGGGGAGACCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAGgttttgtctgtggacctttgaaagctacttatattttgtaatatgaagaagattttcttactatcggttcagcatagccaacctttataacttaacacag
upper sequence: Vv18s0001g03790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G157172_T01 (Zea mays), 5'ss of exon 6
TTCTACCGAAGGAAGAACATGCAAACCATTTAATCCATTACTAGGGGAGACCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGgtatgttaaaca--tttctttctttgtc-atctgttgcatacttctcttgacattgtgcctttctgtttgtccctagtaggttaacatggtaatttaatttta-
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CTCTACAGATGGGAGGAGCTGTAAGCCTTTTAATCCCCTTCTTGGGGAGACATATGAAGCAGACTATCCAGACAAAGGCCTCCGTTTTTTCTCTGAAAAGgtctgttaattaagcacaattctctgttgagttggtgtaatcattctttttcat-gagtaaatctgttttatccacatatattgttctctta---caagttagg
upper sequence: Vv18s0001g03790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G147332_T01 (Zea mays), 5'ss of exon 5
TTCTACCGAAGGAAGAACATGCAAACCATTTAATCCATTACTAGGGGAGACCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGgtatgttaaacattt-ctttctttgtcatctgttgcatacttctcttgacattgtgcctttctgtttgtccctagtaggttaacatggtaatttaatttta
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CTCTACAGATGGCAGGAGCTGTAAGCCTTTTAACCCCCTTCTTGGGGAGACATATGAAGCAGACTATCCAGACAAAGGCCTCCGTTTTTTCTCTGAAAAGgtcagttaattaagcacagttttcttcaaatttggactagtcatgttttcttcaaattaagcacactattacccattgattctgatc-tacgttgctgtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717040|gb|FC065900.1|FC065900EST: CCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAG GTTAGTCATCACCCTATGATTGTTGCATGTCACTGTGAGGGTACGGGATGG
genomic: CCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGgtatgttaaa ... gttgagtcagGTTAGTCATCACCCTATGATTGTTGCATGTCACTGTGAGGGTACGGGATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTACCGAAGGAAGAACATGCAAACCATTTAATCCATTACTAGGGGAGACCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGgtatgttaaacatttctttctttgtcatctgttgcatacttctcttgacattgtgcctttctgtttgtccctagtaggttaacatggtaatttaatttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT