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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgtgaaaccacctagcactttttatctttctattatatctggcaattaccataaggcaaccagatcaaaactgatgcttttttaactgtttag

Basic information

species Vitis vinifera
transcript Vv18s0001g03150.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579621|gb|CB002316.1|CB002316
EST:     GAGCCAATAGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|110371933|gb|EC936069.1|EC936069
EST:     GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|71873170|gb|DT022225.1|DT022225
EST:     GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|110709129|gb|EE084317.1|EE084317
EST:     GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|110382676|gb|EC946993.1|EC946993
EST:     GAGCCAATAGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|46910084|gb|CN545459.1|CN545459
EST:     GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|27580878|gb|CB003573.1|CB003573
EST:     GAGCCAATAGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|83275290|gb|DV938441.1|DV938441
EST:     GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|30321569|gb|CD004831.1|CD004831
EST:     GAGCCAATAGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|27580470|gb|CB003165.1|CB003165
EST:     GAGCCAATAGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
EST: gi|27581639|gb|CB004334.1|CB004334
EST:     GAGCCAATAGCTACTACTCCTGTCATCTCTGGAGTAATGGT                         ATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC
genomic: GAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTgtaagtgtgt ... aactgtttagATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGC