1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGCAAGAGGGAATGATCTGGATTTGGCCTGGCAGTGATCCTCCAACAGCCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGgtatgttatcaatgcattcagatctttctgttgtttgaatacttaaaaggcatttttggtctcctcatttctatcattattttttgggaattgcag
species | Vitis vinifera |
transcript | Vv18s0001g02700.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACCCTTTCTTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAG ATTGTCATGAAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTGEST: gi|351052221|gb|FQ452375.1|FQ452375
genomic: CACCC-TTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGgtatgttatc ... ggaattgcagATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTG
EST: CCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAG ATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTGEST: gi|349827565|gb|FQ422433.1|FQ422433
genomic: CCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGgtatgttatc ... ggaattgcagATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTG
EST: CCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAG ATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTG
genomic: CCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGgtatgttatc ... ggaattgcagATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCAAGAGGGAATGATCTGGATTTGGCCTGGCAGTGATCCTCCAACAGCCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGgtatgttatcaatgcattcagatctttctgttgtttgaatacttaaaaggcatttttggtctcctcatttctatcattattttttgggaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG