Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagttaagttccatatgcttggaatgtgtgaactcacatatg...

Basic information

species Vitis vinifera
transcript Vv18s0001g02260.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G10130.1 (Glycine max), 5'ss of exon 4
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagttaagttccatatgcttggaatgtgtgaactcacatatg
||||||||| ||||||||||||||| |||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||||||| ||| |||     ||||||  ||   ||    |||   |  |   | |   |  |    |  ||  ||||   ||   |||  |    ||    |  
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtcccaaagactaacttgttttgtcttatatttggttttgtgaatcaacatagtcgtgtgtgtatcatacttttaatatggatagtttcttgcaat

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagttaagttccatatgcttggaatgtgtgaactcacatatg--
||||||||| ||||||||||||||| |||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||||||  ||| ||| | |    ||   ||  | |  | ||| ||    || |  |  | ||     |   |  | |||  |    | |   ||   ||  |    
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcacaaaacttg--tttgttttttgtggttttgcaaattaatgtagtcgtgttttaccatacttaacatggataatttctagcaatcaacccagaaa

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 3
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagtt---aagttcca-----tatgcttggaatgtgtgaac-tcacatatg
||| ||||| ||||||||||| || ||||| ||||| || ||||||||||||||||| || ||| | ||||| ||||| ||||||||||||||| | ||| || |||       || |  ||||  |    |||| ||||||  | ||   || ||||      |||   |  | | |||     |  | |   
GGAACTTGCAAAAGATTTTGTAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctcgaaattcaatttg-------ttgcctttgatgttgcttttttttttttagaatttgcaaattcctgcagttatatctatattttgtttgtattgcttg--

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 3
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagtt-----aagttccatatgcttggaatgtgtgaactcacatatg
||| ||||| ||||||||||  || ||||| ||||| || ||||||||||||||||| || ||| | ||||| ||||| ||||||||||||||| | ||| || |||  ||   |||  | ||  |   | |||    |||  || ||     |  |    |||  || |  |||||    | |  | | 
GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctcgaaattcaatttg--ttgccttt--aatgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtttgtgttgcttgagtttt-

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaatt----ttctattgaaatcctattttatttttttaagttaagttccatatgcttggaatgtgtgaactcacatatg
|||| | |||||||||||||||||  | || ||||| || || ||||| ||||||||||| || ||||||||||| || || ||||| |||  |      |||||||  ||  |     |||  | || |  | | | | | ||| | |  | |     || || | |||   |    |   |  ||| 
GGAGTTAGCTAAAGATTTTGTTGTCTCGGGAACTGCTTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACCAGATATGgtatgtgccttctgaaaacttgtttttgtaccgattcactggatactcaaatgtgtgtttatcacctgaaa---atttggtaggatcattcatatgtaagtat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025252|gb|FQ434265.1|FQ434265
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351043059|gb|FQ443901.1|FQ443901
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGGCATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110358622|gb|EC922965.1|EC922965
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351036035|gb|FQ463880.1|FQ463880
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351042763|gb|FQ431241.1|FQ431241
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|33406690|gb|CF212317.1|CF212317
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351046593|gb|FQ453209.1|FQ453209
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|33406790|gb|CF212417.1|CF212417
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110399653|gb|EC966170.1|EC966170
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351015363|gb|FQ446242.1|FQ446242
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349832596|gb|FQ421954.1|FQ421954
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351045652|gb|FQ440837.1|FQ440837
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349813662|gb|FQ413896.1|FQ413896
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAACCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|71889280|gb|DT038335.1|DT038335
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|71882433|gb|DT031488.1|DT031488
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351048930|gb|FQ449773.1|FQ449773
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAGGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110402513|gb|EC960313.1|EC960313
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|26257297|gb|CA808360.1|CA808360
EST:     CCTCTGAGTCTCTTTACGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351054655|gb|FQ456852.1|FQ456852
EST:     CCTCTGAGCCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|26258189|gb|CA809252.1|CA809252
EST:     CCTCTGAGTCTCTTTACGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351025704|gb|FQ426718.1|FQ426718
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351018809|gb|FQ425711.1|FQ425711
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|22011604|gb|BQ796638.1|BQ796638
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110414417|gb|EC980248.1|EC980248
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351018791|gb|FQ425693.1|FQ425693
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGGGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349809085|gb|FQ398085.1|FQ398085
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349815197|gb|FQ400352.1|FQ400352
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110419042|gb|EC985234.1|EC985234
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349829265|gb|FQ419797.1|FQ419797
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349829602|gb|FQ421120.1|FQ421120
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351037207|gb|FQ457040.1|FQ457040
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110689722|gb|EE066205.1|EE066205
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349829652|gb|FQ421170.1|FQ421170
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349808570|gb|FQ405714.1|FQ405714
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCACGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110717244|gb|EE092941.1|EE092941
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|30125493|gb|CB910832.1|CB910832
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGNGA-TTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGT
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAG-GAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGT
EST: gi|110394987|gb|EC960457.1|EC960457
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110722163|gb|EE098155.1|EE098155
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|71890265|gb|DT039320.1|DT039320
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110387657|gb|EC952341.1|EC952341
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351045223|gb|FQ451671.1|FQ451671
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349832955|gb|FQ423077.1|FQ423077
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351018701|gb|FQ425603.1|FQ425603
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110423662|gb|EC990010.1|EC990010
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110700596|gb|EE077387.1|EE077387
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110372541|gb|EC936718.1|EC936718
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110362397|gb|EC925927.1|EC925927
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|30299742|gb|CB976536.1|CB976536
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|349813934|gb|FQ414168.1|FQ414168
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|77578611|gb|DV218095.1|DV218095
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCA
EST: gi|110423854|gb|EC990205.1|EC990205
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351029247|gb|FQ435447.1|FQ435447
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110391604|gb|EC956591.1|EC956591
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|110715271|gb|EE093128.1|EE093128
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|71859023|gb|DT008078.1|DT008078
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|351031280|gb|FQ445305.1|FQ445305
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|294966117|gb|GW837484.1|GW837484
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATTCAGA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCAT-CAGT
EST: gi|110381521|gb|EC934688.1|EC934688
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|32457736|gb|CD798910.1|CD798910
EST:     GCCATGTTCAAGCCCGACACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGT
genomic: GCCATGTTCAAGCCCG--ACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGT
EST: gi|349822039|gb|FQ408368.1|FQ408368
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
EST: gi|161720329|gb|FC071182.1|FC071182
EST:     CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG                         GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA
genomic: CCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctca ... tattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagttaagttccatatgcttggaatgtgtgaactcacatatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa