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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatccttgattcaaagcacctttttattttttttatataattttgtgttggtgttagttgattcacccttcccttttgtactccag

Basic information

species Vitis vinifera
transcript Vv18s0001g01770.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G09200.1 (Glycine max), 5'ss of exon 5
GTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatccttgattcaaagcacctttttattttttttatataattttgtgttggtgttagttgattcacccttcccttttgtactccag
|| |||||||||||||| || |  || ||||||| ||| |||||||| ||||||  ||||   |||| ||||||||||||||| ||||||||||| ||   |   |  || ||| | ||  || | |||| || |       ||     |   ||||   || | |   |||| |      
GTAACAGCTCCTGGAGGGAGAACAAGAGATAGAAGGAGTGACTTGCTTGTTATATCTGATCGTGGGAGCTCCTTCAAAATAATACATGCGgtgactatttctttcttgaatcacttcttatttatctttacattaca----attacacct--ctgatatgccat-cttatttgcag-----

upper sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 5
GTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatccttgattcaaagcacctttttatttttt--ttatataattttgtgttggtgttagttgattcacccttcccttttgtactccag
|| |||||||||||||| || |  || ||||||| ||| |||||||| ||||||  ||||   |||| ||||||||||||||| ||||||||||| ||   |      || ||  |  | |||  |   | || ||  |||   ||    || |    |      | || | || |  | |||
GTAACAGCTCCTGGAGGGAGAACAAGAGATAGAAGGAGTGACTTGCTTGTTATATCTGATCGTGGGAGCTCCTTCAAAATAATACATGCGgtgactatttctttcctgaatcaa-taatcattaatgagtcatttatctttacattacaatt-gcacctctgatataccatcttat-ttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826810|gb|FQ418901.1|FQ418901
EST:     ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG                         AGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
genomic: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatcc ... tgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
EST: gi|37188703|gb|CF608052.1|CF608052
EST:     ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG                         AGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
genomic: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatcc ... tgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
EST: gi|349824926|gb|FQ406465.1|FQ406465
EST:     ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG                         AGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
genomic: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatcc ... tgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA