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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGCAATGTTGAAAGTAGACAAGCTTGCTACTGGACATAATGCAGATGATATTGCTGAAACTGTACTTTTAAACATATTACGAGGTGATATTGCCAGgtaatgcattgataggttaaactttctttttctttcaggcttcttctcgcttttctttctggctgctgagttgatgcatttactttgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g00440.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g41565.1 (Oryza sativa), 5'ss of exon 5
GTGCTGCAATGTTGAAAGTAGACAAGCTTGCTACTGGACATAATGCAGATGATATTGCTGAAACTGTACTTTTAAACATATTACGAGGTGATATTGCCAGgtaatgcattgataggttaaactttctttttctttcaggcttcttctc--gcttttctttctggctgctgagttgatgcatttactttgtag
|||||||  | || ||||| |||||| |||  |||||||||||||| ||||| ||||| ||||||||  | || || |||||||| |||||||||||  ||| | |   ||||   |      | |||||| ||    | ||  | |   |  |   |||||   |    ||                    
GTGCTGCTCTCTTAAAAGTTGACAAGATTGTGACTGGACATAATGCTGATGACATTGCAGAAACTGTGTTATTGAATATATTACGTGGTGATATTGCACGgtta-gtgctgatcattcctttgtccttttttttctgtggttgatgttaaggctgattttctttatatatag--------------------

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g52470.2 (Oryza sativa), 5'ss of exon 6
GTGCTGCAATGTTGAAAGTAGACAAGCTTGCTACTGGACATAATGCAGATGATATTGCTGAAACTGTACTTTTAAACATATTACGAGGTGATATTGCCAGgtaatgcattgataggttaaactttctttttctttcaggcttcttctcgcttttctttctggctgctgagttgatgcatttactttgtag
|||||||  | || ||||| |||||| |||  |||||||||||||| ||||| ||||| ||||||||  | || || |||||||| |||||||||||  ||| | |   ||||   |    |||| |  || |||  ||    |  | | | ||  | |||  |      || ||  ||           
GTGCTGCTCTCTTAAAAGTTGACAAGATTGTGACTGGACATAATGCTGATGACATTGCAGAAACTGTGTTATTGAATATATTACGTGGTGATATTGCACGgtta-gtgctgatcattc---ctttgtcctttttttggg----tggttgatgttaatgctgattttc---tttatatatag---------

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G44270.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGCTGCAATGTTGAAAGTAGACAAGCTTGCTACTGGACATAATGCAGATGATATTGCTGAAACTGTACTTTTAAACATATTACGAGGTGATATTGCCAGgtaatgcattgataggttaaactttctttttctttcaggcttcttctcgcttttctttctggctgctgagttgatgcatttact-ttgtag
| |||||  | ||||||||||| ||||| |  ||||||||||||||||||||||| || ||||| || || || |||||||| ||||| |||||||| |||||| | |||  | | |   | ||  |      |  |   |   ||||| |  ||   ||   || | | |||   ||||      |||||
GAGCTGCGTTATTGAAAGTAGAGAAGCTAGTCACTGGACATAATGCAGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCTAGgtaa-gtatttgttgat--gatttgatggaaaatgaaaaatctgtctcgttcctcaa-ctaattgat-atttgtaacattggtaactgtag

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G76170.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGCTGCAATGTTGAAAGTAGACAAGCTTGCTACTGGACATAATGCAGATGATATTGCTGAAACTGTACTTTTAAACATATTACGAGGTGATATTGCCAGgtaatgcattgataggttaaactttctttttctttcaggcttcttctcgcttttctttctggctgctgagttgatgcatttactttgtag---------
| |||||  | ||||||||||| ||||| |  ||||||||||||||||||||||| || ||||| ||  | ||||||||| | ||||| |||||||| ||||||   ||  |    |  |    | |||||| || |  |||        | |   |  || |  || | |||||  ||||    | | |         
GAGCTGCGTTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCAGATGATATAGCCGAAACAGTTGTCTTAAACATACTGCGAGGCGATATTGCTAGgtaa-atatatacgtttctagtgatgtttttccttgaatcttggctataatatgtctcatgtcc-cttaattgattgatttgtaatttggctattgtag