Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtgatgttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtgaatctctgctttttatggttacatgctattgttctccaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G099598_T01 (Zea mays), 5'ss of exon 5
GAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtgat-gttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtg-aatctctgctttttatggttacatgctattgttctccaat
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GAAGAGTAACATCAGAAAGTGTCATATTCAGCTTTGGCACTATACTGCTGGACCTCCTAAGTGGAAAGCGTATACCTCCTTCCCGTgtaagtttttttttaccggtaactattttctttccttgttgcaccttatcctagttccacggaagtagagtccctttcacaaaaatacctttgtatttaa--
upper sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 4
--------------GAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtga------tgttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtga-atctctgctttttatggttacatgctattgttctccaat
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AGTTTTATTTTCAGGCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttcttgctagaaatgtcttatgctttgttagatatgaggtctgtttctgcaaatataaaaatacacatgccacccatgcttgcagactgcagtg-------
upper sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G026767_T03 (Zea mays), 5'ss of exon 5
GAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtga------tgttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtga-atctctgctttttatggttacatgctattgttctccaat
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GCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttcttgctagaaatgtcttatgctttgttagatatgaggtctgtttctgcaaatataaaaatacacatgccacccatgcttgcagactgcagtg-------
upper sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 5
GAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtgatgttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtgaatctctgctttttatggttacatgctattgttctccaat-------
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GAAGAGTAACATCAGAAAGTGTCATATTCAGCTTTGGCACTATACTGCTGGACCTCCTAAGTGGAAAACGTATACCTCCATCCCGTgtaagtttttcttgctggtaactattttcttcccttgt-tgcactt-tatcctagtt-----cccgtgtgatacagaagtacagaacttttttcacaaaagacctttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543647|gb|CF511879.1|CF511879EST: GGACTGTCCTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCAT GCTCTGGATATGATACGGGGTAAAAATATTCCCCTATTAATGGATTCACAT
genomic: GGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttt ... tggtgtccagGCTCTGGATATGATACGGGGTAAAAATATTCCCCTATTAATGGATTCACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtgatgttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtgaatctctgctttttatggttacatgctattgttctccaat
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