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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAACTGgtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcag

Basic information

species Vitis vinifera
transcript Vv17s0053g00780.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G29810.1 (Glycine max), 5'ss of exon 5
CAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAACTGgtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcag
||| ||||||||||||||||| || |||||  ||||||| |||||| |||| ||  |||| || |||||||||||| | || || |||||  | ||| |||||  | |  |  ||  ||  ||  |  ||||   |     || ||||    ||    ||  | ||||  |        |  | | | | |||
CAAGTGGATGGAGCTATTTCCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTAGCCATAGTGGTTCTTTGCAATTGgta--tgctgg--aattttgtccaatttattttctttgaattttcattcccgttttgcttccatttttattttttatttttttatgatt-cag

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 5
CAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAACTGgtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcag
||| ||||||||||||||| | || |||||  ||||||| |||||| |||| ||  |||| || |||||||||||||| ||  | |||||  | ||| |||||  |    |  ||  ||  ||| |  |||    |      | ||||    ||    || || |||   |        |  | | | | |||
CAAGTGGATGGAGCTATTTTCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTGGCCATGGTGGTTCTTTGCAATTGgta--tgttgg--aattttgtcctatttattatctttgaatattcattctcgttttgcttcaactttgaatttttattttgttatgatt-cag