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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAGgtacgacacttgccatgtttcttcttattttgaagaaaacaatgtagtttattgttcattggagtcttggttgtgtttctataatttgtggtcaaggttagaacaatgcatttgctattttgctgttgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g10130.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 5
GTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAGgtacgacacttgccatgtttcttcttattttgaagaaaacaatgtagtttattgttcattggagtcttggttgtgtttctataatttgtggtcaaggttagaacaatgcatttgctattttgctgttgcag
|||||||||||||||| || || |||||| | || ||||||||||||||    | |      | || ||| || || ||  ||  | ||||| ||||  |||  |||||| | |||  | | |    ||  ||   | |     || |   |                          
GTGGTGAGTTTACGTCTCCAAACCAAGAGCGGTTTCATCACTACAAGgtttagctcacattctcttgctt-ttgttatgt-gacgagaatgtggtttggtgt--attgga-ttttgactatttggtgatgtttatggatttttatttgtttag-------------------------

upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAGgtacgacacttgccatgtttcttcttattttgaagaaaacaatgtagtttattgttcattggagtcttggttgtgtttctataatttgtggtcaaggttagaacaatgcatttgctattttgctgttgcag
||||||| ||||| || |||||||||||| | |||||||||||||||||  |     |   || |||||   | ||       |  || |  |||  |||  |  ||  | |  |  || | ||| | ||  ||| |||   ||||  |   ||                        
GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgag-----tagtatatttctgtgtgtt-------agccagtccagtccattagtttttttatttctcatttttttttt-tatcttggggtt--ggtttaatttatag----------------------