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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTGCAATAGTTTCATGCTTGCTGGGGCCTGAGCGAGCAGAAAAAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaacttttcatcccacttaatgttgatgcagtcagtgtaaccactcattcaacttaaatgttcatgtagtcagttgctttctggagaccacatggaag...

Basic information

species Vitis vinifera
transcript Vv17s0000g09910.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09910.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g36750.1 (Oryza sativa), 5'ss of exon 5
GTCTCTGCAATAGTTTCATGCTTGCTGGGGCCTGAGCGAGCAGAAAAAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaa---acttttcatcccacttaatgttgatgcagtcagtgtaaccactcattcaacttaaatgttcatgtagtcagttgct-ttctggagaccacatggaag--
|| || |||||||||||||| || ||||| ||||| || ||||||||||| |  |||||||| || || ||||||||||| ||||| |||||||||||||   | |||| |   || | |||  | || |  |||    ||| |   |||| |  ||  | || |||     |     | ||  | ||   | | || |   
GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTACCATATTTGCTGGAGATGTGGTTCCTCGTAAAAAACCTGATCCAgtaagttattttttaattcaataaatactaattctatca----aacaat--attctatctagttctttatgggaagaaaaattatttcgaagtgtatagggcatag

upper sequence: Vv17s0000g09910.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G36600.1 (Glycine max), 5'ss of exon 5
GTCTCTGCAATAGTTTCATGCTTGCTGGGGCCTGAGCGAGCAGAAAAAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaacttttcatcccacttaatgttgatgcagtcagtgta-accactcattcaacttaaatgttcatgtagtcagttgctttctggagaccacatggaag-
|||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||   ||||||||  || | |||| ||   ||   | |  |  || || ||||  ||  |||     || |   | ||  |    |    ||||   |  
GTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTgtaagaatttcatccttct-actgttaatttggtagtttttcagaacacaatcaaaatatgtgtagtcctatttcatggccctgcatat-taacattccatt

upper sequence: Vv17s0000g09910.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G18320.1 (Glycine max), 5'ss of exon 6
GTCTCTGCAATAGTTTCATGCTTGCTGGGGCCTGAGCGAGCAGAAAAAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaacttttcatcccacttaatgttgatgcagtcagtgtaaccactcattcaacttaaatgttcatgtagtcagttgctttctggagac-cacatggaag------
|||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||   ||||||||  || |||||| ||   || ||| |  |  | ||  |||   |||| ||  | |||||   |  |||  ||     || ||  |        
GTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCAgtaagaatttcatccttct-aatgttaatttggt-agttttccagcaca--caatcaaaatatttgt-tagtc--ctattttacggccctgcatattaacattccgt

upper sequence: Vv17s0000g09910.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G48420.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCTCTGCAATAGTTTCATGCTTGCTGGGGCCTGAGCGAGCAGAAAAAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaacttttcatcccacttaatgttgatgcagtcagtgtaaccactcattcaacttaaatgttcatgtagtcagttgctttctggagaccacatggaag
|| ||||| ||||||||||||||||| || || || |||||||| |||||||||||||| ||||| ||||| || ||   ||| || |||||||||||||  |  |||     |   ||| |    ||     |||      |  |||  |||   |    |   |||||      || | |   |   |  |   
GTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaagttactcactttcc---atgctatcacaacatatgttttgcttgcttcgtcttggttaaagaccgagtcatcaaactttttgtttcttaacag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110366041|gb|EC929676.1|EC929676
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|110357588|gb|EC921779.1|EC921779
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|351046213|gb|FQ442591.1|FQ442591
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAAACTTTCA-G
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTT-CAAG
EST: gi|351046860|gb|FQ454470.1|FQ454470
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATGCGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|110376295|gb|EC941348.1|EC941348
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|351048691|gb|FQ448965.1|FQ448965
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTG
EST: gi|351053962|gb|FQ441728.1|FQ441728
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACTTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|110383854|gb|EC948256.1|EC948256
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|110376164|gb|EC941208.1|EC941208
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|18459790|gb|BM438068.1|BM438068
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|110361698|gb|EC925191.1|EC925191
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|351031800|gb|FQ460057.1|FQ460057
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG
EST: gi|351054042|gb|FQ441808.1|FQ441808
EST:     AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCA                         GCCATTTATACGTTAGCAGCTAGCACTTTGGGTGCTGAACCTTCAAG
genomic: AAATCAAGATATTTGCAGGCGACGTGGTTCCTCGAAAAAAGCCTGATCCAgtaaactttt ... tttttgacagGCCATTTATACGTTAGCAGCTAGCACTTTGGGTGTTGAACCTTCAAG