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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag

Basic information

species Vitis vinifera
transcript Vv17s0000g09500.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggct-tgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtt--tcaacag
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||  ||||||     | |||  |  ||||       ||     ||  | ||||   ||    | ||||||  ||||| |  |   |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaacatt----ggtgaatttgaatggatggtgggcag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggct-tg-atttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |   ||  |||||||    | || | |  |||||    |  |  || | || | ||||   || ||| ||       ||||||   | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattatgacaattatgcactgacccaaaaatataaccatat-ggtgcttaaacgttggtgaatttggattaatggtg--agcag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggct-tgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |   ||  ||| ||     | |||  |  || |       ||   | ||| | ||||   || ||| ||       ||||||   | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtg--agcag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggct-tgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag----
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |   ||  ||| ||     | |||  |  || |       ||   | ||| | ||||   || ||| ||       ||||||   | |||    
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtg--agcaggtct

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||| || |||||| |||||||||||||| |     | ||  |||||||||||        | ||||||||||||||| ||||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatggattgatttccccaatat-----acataatgggggttaag--------ggtgaattcaaatggttgcaacag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    || | || ||||||  | ||||||||||||| || |||| |||||||||||||||   |    |||||| ||||||||| |||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatggaatcatttccccaattt-acaaataatttgggggttaagacaacg---gtgaatttaaatggttttaacag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    || | || ||||||  | ||||||||||||| || |||| |||||||||||||||        |||||| ||||||||| |||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatggaatcatttccccaattt-acaaataatttgggggttaagacaaca---gtgaatttaaatggttttaacag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaatt-atgatggct-tgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaa-tggtttcaacag
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  | |  | ||  ||||| || |||||| |||   ||   ||| ||  | |||||| | | |||||||||||| | ||| ||||| | ||||
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaa-atagttggggttga-attttgtggatgaacttaaaatggttgctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322713|gb|CD005975.1|CD005975
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataa ... gtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
EST: gi|32272087|gb|CD721246.1|CD721246
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataa ... gtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
EST: gi|32268109|gb|CD717268.1|CD717268
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataa ... gtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
EST: gi|30324825|gb|CD008087.1|CD008087
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataa ... gtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
EST: gi|32268970|gb|CD718129.1|CD718129
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataa ... gtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
EST: gi|32248754|gb|CD714573.1|CD714573
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataa ... gtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
EST: gi|71856051|gb|DT005106.1|DT005106
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATT                         GTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataa ... gtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAAT