Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGAAATGGGCGGTTTCATACTCCCCGTGATACCTGGAGTTGCTAGTGGGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAGgtatgtgcttaattatattagcatacttacctgcacagtgaaacaaatctagagaatttttcacagcccttaggctcatgtatggatgcataaagctgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G02710.1 (Glycine max), 5'ss of exon 5
TGCTGAAATGGGCGGTTTCATACTCCCCGTGATACCTGGAGTTGCTAGTGGGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAGgtat-gtgcttaattatattagcatacttacctgcacagtgaaacaaatctagagaatttttcacagcccttaggctcatgtatggatgcataaagctgca
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TGCCAAAGTGGGTGATATCATACTTCCTGTTGTACCAGGAATAGCTAGCGGGGAGGGCTGTTCAATTCATGGTGGCTGTGCATCTTGTCCATACATGAAGgtagagtttgtcatttggtttggata-tggttcgctcagtttataatcaacttaagatcttgaattgtagttggattaataattataattggtaggtcatt
upper sequence: Vv17s0000g09490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G13410.1 (Glycine max), 5'ss of exon 5
TGCTGAAATGGGCGGTTTCATACTCCCCGTGATACCTGGAGTTGCTAGTGGGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAGgta---tgtgcttaattatattagcatacttacctgcacagtgaaacaaatctagagaatttttcacagcccttaggctcatg-tatggatgcataaagctgca
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TGTCAAAGTGGGAGATATCATACTTCCTGTTGTGCCAGGAATAGCCAGCGGGGAGGGTTGTTCCATTCATGGTGGCTGTGCATCTTGTCCATACATGAAGgtagaatttgtcatttggtttggatatggttagct-cagtttataatcaacttaag--atcttgaactacagttggattaataataataattggtaggtcatt-
upper sequence: Vv17s0000g09490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S20_135V6.1 (Physcomitrella patens), 5'ss of exon 7
TGCTGAAATGGGCGGTTTCATACTCCCCGTGATACCTGGAGTTGCTAGTGGGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAGgt----atgtgcttaattatattagc--atacttacctgcacagtga-aacaaatctagagaatttttcacagcccttaggctcatgtatggatgcataaagctgca
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CTACGACTCAACCCTGGCGAAGCTGTCAGTTGTTCCAGGAGTGGGTTCTGGAGAGGGCTGTTCAATAAGTGGTGGCTGTGCATCATGTCATTACATGAAGgtcggtataaactttttacccctagtcagtggctatattcttgcttacagtagagctttaggattaa-cacagacaggactctacctcaatgtcctagaaa------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352769317|gb|FQ471466.1|FQ471466EST: GGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAG ATGAATTCTCTTAGCTCACTGCTTAAAGTTTGCCACCATCTGCCTCATGAG
genomic: GGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAGgtatgtgctt ... gatgtaccagATGAATTCTCTTAGCTCACTGCTTAAAGTTTGCCACCATCTGCCTCATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGAAATGGGCGGTTTCATACTCCCCGTGATACCTGGAGTTGCTAGTGGGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAGgtatgtgcttaattatattagcatacttacctgcacagtgaaacaaatctagagaatttttcacagcccttaggctcatgtatggatgcataaagctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataaa