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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGGAGGATGCGCAACACTGGTAATGCTGTGTGGGCTCGAGGAACACGACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtccattttaaattgtaatcatctcttatgttgaaattatttttagtcttaattagttgctgtggacttttttcttgtgtttttgttcttggg...

Basic information

species Vitis vinifera
transcript Vv17s0000g09280.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135185|gb|CB920523.1|CB920523
EST:     GAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|110428225|gb|EC994690.1|EC994690
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|110727900|gb|EE105187.1|EE105187
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTTGAA-TTTCAGTTGA
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTT-GAAATTTCAGTTGA
EST: gi|30125556|gb|CB910895.1|CB910895
EST:     GAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|110699168|gb|EE075929.1|EE075929
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|30322657|gb|CD005919.1|CD005919
EST:     GATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|30325647|gb|CD008909.1|CD008909
EST:     GATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|30127731|gb|CB913070.1|CB913070
EST:     GAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|30306281|gb|CB983075.1|CB983075
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|32271005|gb|CD720164.1|CD720164
EST:     GATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|110424289|gb|EC990645.1|EC990645
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|30327006|gb|CD010268.1|CD010268
EST:     GATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|30327640|gb|CD010902.1|CD010902
EST:     GATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|110719040|gb|EE096561.1|EE096561
EST:     CACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|110726600|gb|EE102523.1|EE102523
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|30306027|gb|CB982821.1|CB982821
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|351037577|gb|FQ462560.1|FQ462560
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
EST: gi|110690229|gb|EE067146.1|EE067146
EST:     GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAG                         ATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT
genomic: GACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtc ... atgttgccagATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTTGGAGGATGCGCAACACTGGTAATGCTGTGTGGGCTCGAGGAACACGACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGgtaggtggtccattttaaattgtaatcatctcttatgttgaaattatttttagtcttaattagttgctgtggacttttttcttgtgtttttgttcttggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT