Sequence
atgc intronic sequence ATGC exonic sequenceACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggtttccttgctttgcttcctttctcatttacgagtcagcttaatttgcatcaggaataactttttggaaattataagcactgttcacttctatag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g68320.3 (Oryza sativa), 5'ss of exon 5
ACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggttt-ccttgctttgcttcctttctcatttacgagtcagcttaatttgcatcaggaataactttttggaaattataagcactgttcacttctatag
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TCACACTAACCTGCGAAGAGTAACATACCTCGTCCTGGATGAGGCTGACCGCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttgttttagaatgcttatatcagttctggtgttttggctaactctccatt---------ttttctattgtgctaaacgtttttgttgttaatag
upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 5
ACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggtttcc--ttgctttgcttcct-ttctcatttacgagtcagcttaatttgcatcaggaataactttttggaaattataagcactgttcacttctatag
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GCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGgtactgtttgcaactaacatgtaactagttagtactgagtaatggggaaaagaaacctcaaatctatttccatttgtgtgctactgatagtttaccaacc---
upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G02590.1 (Glycine max), 5'ss of exon 5
ACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggtttccttgctttgcttcct----ttctcatttacgagtcagcttaatttgcatcaggaataact----ttttggaaattataagcactgttcacttctatag
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GCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGgtacttttttgcaactaacctgtaacaagttagtactgagtagtggggaaaagaaacattgaatctatttccatttttgaaccttaagtgtgctgttgtc--------
upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 5
ACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggtt-tccttgcttt---gct-tcctttctcatttacgagtca-gcttaatttgcatcaggaataactttttggaaattataagcactgttcact--tctatag------------------------------------------------------------
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ACACACTAATTTGAAGAGAGTGACTTACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGAAAGATTGTATCTCAGgtatgtttgtactttctccaaagctatcatgtagtgtctttaaggaaagggtggttgaccaacattattagtcgatagattttatcttcccagtttattgttctgttgctaaataagaaccatcacggcttttgttcagaacttgagattgttccttatttttcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188613|gb|CF607962.1|CF607962EST: GAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAA ATCCGACCAGATAGACAGACATTATACTGGAGTGCCACATGGCCAAGGGAG
genomic: GAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggtttc ... ttaattacagATCCGACCAGATAGACAGACATTATACTGGAGTGCCACATGGCCAAGGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggtttccttgctttgcttcctttctcatttacgagtcagcttaatttgcatcaggaataactttttggaaattataagcactgttcacttctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa