Sequence
atgc intronic sequence ATGC exonic sequenceACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttcttactaacattaccaaaacaaacatggaaatctttcttcttgtatttagatgtattacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g08990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G18880.1 (Glycine max), 5'ss of exon 2
ACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttc--ttactaaca--ttaccaaaacaaacatggaaatctttcttcttgtatttagatgtattacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcag
| ||||||||||||||||||||||| || | |||||||| |||||||||| | | ||||| ||||||||| |||||||||||| || |||||| | ||||||| | | | ||| ||| |||| | | | | | || | | | | | | | | || | || | | |||| | |
ATTACTGGCCACAGTACACTCCAATATCAGCGCCTGCAGATCATGATCTCACGCTTTTCACCGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGGgtaagttgacccataacttacagactaccttatctactgtcctactcaattatttcttttctttttattataaagttcataagtactgttattaaatact----------------------------
upper sequence: Vv17s0000g08990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G36040.1 (Glycine max), 5'ss of exon 5
ACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttc--ttact--aacattaccaaaacaaacatggaaatct-ttcttcttgtatttagatgtat-tacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcag
| ||||||||||||||||||||||| || | |||||||| || ||||| | | | ||||||||||||||| |||||||||||| || |||||| | ||||||| | | | ||| || | |||| | | | | || || || || || ||| | ||| |||| || | ||| | | ||
ATTACTGGCCACAGTACACTCCAATATCAGCACCTGCAGATCACGATCTTACGCTTTTCACTGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGGgtaagttgacccataacttgaagactaccttatctactgtcctcttcaattttttttttaattaagtttatatacagttcataagt--actttttgtactgc----------------------------
upper sequence: Vv17s0000g08990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G02520.1 (Glycine max), 5'ss of exon 2
ACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttcttactaacattaccaaaacaaacatggaaatctttcttcttgtatttagatgtattacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcag
| || ||||| || ||||||||||| || || ||| |||| |||||||||| | ||||||||||||||| ||||||| ||||| || |||||| | ||||||| ||| ||||| ||| | | ||| ||| ||| | | || | ||| || | |||| ||| ||| || || || || |
ATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAAACCACTGGTCATGCAGGAATGCGCATAGGgtaag------ttaataacaatactttttcggcctc---aattgttcatctggagt--agtccttttataa-------gttaactcaataa-cataaaagaagataattaagaatagcc-----
upper sequence: Vv17s0000g08990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G09400.1 (Glycine max), 5'ss of exon 2
ACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttcttactaacattaccaaaacaaacatggaaatctttcttcttgtatttagatgtattacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcag
| || ||||| || ||||||||||| || || ||| |||| |||||||||| | ||||||||||||||| ||||||| ||||| || |||||| | ||||||| || ||||| ||| || | ||| ||| || | || || | | | | | |||| ||| ||| || || || || |
ATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAATCCACTGGTCATGCAGGAATGCGCATAGGgtaag------ttgataacaatactttttcagcctc---aattgttc-------atgtggac-tactcctttttagaagttaactcaataa-cataaaagaggataattaaggatagc------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349832956|gb|FQ423078.1|FQ423078EST: ATGTTGTTCACTGTCTCCAAAGCCACTGGCCATGCTGGGATGCGCCTTGG TTGGGCTCTTGTGAAGGATGAAGAGGTTGCAAAGAAGATGACTAGCTTCAT
genomic: ATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagtt ... tgccttgcagTTGGGCTCTTGTGAAGGATAAAGAGGTTGCAAAGAAGATGACTAGCTTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttcttactaacattaccaaaacaaacatggaaatctttcttcttgtatttagatgtattacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG