1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CCCTCGCTGCTGAAGTTTCTGTAGTTCCTCCATCACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattttattgtaatgttgcattatgctgtgaatgtgacttgtttacttaaagtgctttcaaaatcttatatatttatttgttttgtaatacactt...
species | Vitis vinifera |
transcript | Vv17s0000g08930.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAG GGTTACTTCCACCAEST: gi|33403436|gb|CF209063.1|CF209063
genomic: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattt ... gttctttcagGGTTACTTCCACCA
EST: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAG GGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTAEST: gi|71862424|gb|DT011479.1|DT011479
genomic: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattt ... gttctttcagGGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTA
EST: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAG GGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTAEST: gi|71863915|gb|DT012970.1|DT012970
genomic: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattt ... gttctttcagGGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTA
EST: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAG GGTTACTTCCACCAGGAAEST: gi|30129597|gb|CB914936.1|CB914936
genomic: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattt ... gttctttcagGGTTACTTCCACCAGGAA
EST: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAG GGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTAEST: gi|71861729|gb|DT010784.1|DT010784
genomic: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattt ... gttctttcagGGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTA
EST: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAG GGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTG
genomic: ACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattt ... gttctttcagGGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTCGCTGCTGAAGTTTCTGTAGTTCCTCCATCACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattttattgtaatgttgcattatgctgtgaatgtgacttgtttacttaaagtgctttcaaaatcttatatatttatttgttttgtaatacactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG