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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcatatcttctcaagatttggttttgcaaagttgttgtctgccagctttttaaataaaaaacatgcaactgttcgtcttaatcctaacatcttgtgaatatgaattttggttatacag

Basic information

species Vitis vinifera
transcript Vv17s0000g05070.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g05070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 5
TACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacg-----tcatatcttctcaagattt------------ggttttgcaaa----gttgttgtctgccagctttttaaataaaaaacat-gcaactgttcgtcttaatcctaacatcttgt-gaatatgaattttggttatacag-------------
||  |  | |||||  | |||||||||||||| |||||||| ||||| || ||| | |||||||| || ||||||||||| ||||||||||   | ||||||| |     || || ||| |   |||||            | |||   |||    ||   | | | |    || || |  | |||||||   |||| ||  |  | ||  | | |   | | |||  | | |  || || |  ||             
TATTCTGAGTGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagcgtgatcctaacttgtttcgatttctggagttaaaagctttcttaaatactgtgaatattttcttaattcttcatcataaaacatcaaaacttttacttcttattttgataaactatagaaggtaattactgatttttaagttgcttttaacag

upper sequence: Vv17s0000g05070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G27560.1 (Glycine max), 5'ss of exon 5
TACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcatatcttctcaagatttggttttgcaaagttgttgtctgccagctttttaaataaaaaacatgc-aactgttcgt-------cttaatcctaacatctt----gtgaatatgaattttggttatacag------------
||  |  |||||||  | |||||||||||||| |||||||| ||||| || ||  | |||||||| || ||||||||||| ||||||||||   | ||||||| ||   ||||   |  | ||  ||||    |  |     | | |     |  |    |||    ||   || | ||| |        ||| || ||   || |    | |||  | | |  || |  ||               
TATTCTGAATGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcgatctcaacttgtttcagtttctggagttaaaaattttcttaaatactgtgaaaatgttatcttaattcttcataaaacattttactcttattttcataaacgagaaggtaattactgatcttaagttgcttttaacag

upper sequence: Vv17s0000g05070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G08830.1 (Glycine max), 5'ss of exon 4
TACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcatatcttctcaagatttggttttgcaaagttgttgtctgccagctttttaaataaaaaacatgcaactgttcgtcttaatcctaacatcttgtgaatatgaattttggttatacag
||  | |||||||| |||||||| || || || |||||||||||| | || ||| ||||||| ||||||| |||| || |||| |||||||  | | |||||| ||| ||      ||        |  |  |    | | |      | ||| |    || |||| || |             ||| || | ||    | | ||||   | ||||| | |||
TATTCGCAATGGAACCTTGTTGTGCAGCACCCGAACTTTGATAATGTAACGCAGGTTTTCAGCTTTAATTTCAAGCCACTAACACCTTATGTGGGCTTAAgtaagtccta------cagtgcacaatcatatagtcctatgg---ataaacttgt---gtacaaaatattc------------caattcttatatg--attattatgtgatctggttttgcag

upper sequence: Vv17s0000g05070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G32130.1 (Glycine max), 5'ss of exon 5
TACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcatatcttctcaagatttggttttgcaaagttgttgtctgccagctttttaaataaaaaacatgcaactgttcgtcttaatcctaacatcttgtgaatatgaattttggttatacag
||  | |||||||| |||||||| || ||||| || || |||||| | || ||| | ||||||||||||||||||||| |||| || ||||  | | | |||| ||  ||||||    ||        |  ||      ||    |      || | || |||| ||              |  ||| ||   || || |  || ||     ||||| |||||
TATTCACAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGAgtaagttctatctttcatag--------tcaca------ttcctagatgatcttgtgaagaaaatac--------------cccaattct--tatgttattgatttgcgaaatggttttacag

upper sequence: Vv17s0000g05070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G22410.1 (Glycine max), 5'ss of exon 5
TACACCCAATGGAATCTTGTTGTTCAACATCCCAACTTTGATAATCTCACACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcatatcttctcaagatttggttttgcaaagttgttgtctgccagctttttaaataaaaaacatgcaactgttcgtcttaatcctaacatcttgtgaatatgaattttggttatacag
||| | |||||||| |||||||| || ||||| || || |||||| | || ||| | ||||||||||||||||||||| ||| ||| ||||  | | | |||| ||  ||||||                 || ||      ||  | || |  |    | || || || | ||  ||| |            || || |  || || | | ||||| |||||
TACTCTCAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAAATCCCTATGAGGGCTTGAgtaagttctatcttt----------------catagccacaatc--ctagatgatcttgtgaagaaaataccacaattctt------------atgttattgatttgcaatatggttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718206|gb|FC066012.1|FC066012
EST:     ACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAA                         ATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTC
genomic: ACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcata ... ggttatacagATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTC
EST: gi|110398287|gb|EC964540.1|EC964540
EST:     ACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAA                         ATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTC
genomic: ACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcata ... ggttatacagATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTC
EST: gi|110693614|gb|EE069998.1|EE069998
EST:     ACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAA                         ATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTC
genomic: ACAGATTTTCAGTTTTAATTACAAGTCATTAACTCCTTATGCAGCCATAAgtacgtcata ... ggttatacagATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTC