Sequence
atgc intronic sequence ATGC exonic sequenceTTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtggcttaagcttcttaattggaatgatatttgtgtttgacattgtgacagatgtaataatcagaagtacttagtatcaccattgatag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 6
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtggcttaagcttcttaattggaatgatatttgtgtttgacattgtgacagatgtaataatcagaagtacttagtatcaccattgatag----
||||||||||||| | || || || || |||||||| ||| |||||||||| ||| |||| |||||||| ||||| || ||||| ||||| ||||||||||| || || | || ||| | ||| || | ||| |||| | || || || | | | | |||| ||| | ||||| |
TTATGATATATATTTGCTTCCTCCAGGCGAAGATCCAGAATCATGCCAATCTTATTTGAGAATGAGGAATAGGGAAGGGAAATATAATCTGATGTTTGAGgtatgcaatttattgcaatggctacataagtgca----tatgtgtgatggatatagttggttgttttgttacaagaattacctctctggcccattattttatat
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtg-gcttaagcttcttaattggaatgatatttgtgtttgacattgtgacagatgtaataatcagaagtacttagtatcaccattgatag-----
||||||||||||||| || || ||||||||||| || |||||||||||||| || |||| ||| |||| ||||| || ||||| ||||| ||||||||||| | | ||| | ||| || | ||||| ||| |||| | || | | || ||| ||| | | ||| | | |||||||
TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctacc--aatga-attccagttttatgttttttctccctta-taaatggaatt--tcagttttatgtttgatagctaca
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G143804_T01 (Zea mays), 5'ss of exon 3
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtggcttaagcttcttaattggaatgatatttgtgtttgacattgtgacagatgtaataatcagaagtacttagtatcaccattgatag----
||||||||||||||| || || | ||||||||| || |||||||| ||||| || |||| ||| |||| ||||| | ||| | ||||| ||||||||||| | ||||| | || || | || || ||| | | | | | || ||| | | | | | | ||||||
TTATGATATATATCTACTTCCACATGGTGAAGACCCAGAAGCATGTCAATCTTACATGAGAATGCGGAATAGGGAAAGGAAAAATAATCTAATGTTTGAGgtatatctgttttatattttcctatcataccaatggaattccagtttttatgacttttctc--ccttacaaatggaatt--tcaattttatgtttgataaatat
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G09080.1 (Glycine max), 5'ss of exon 6
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtggcttaagcttcttaattggaatgatatttgtgtttgacattgtgac--agatgtaataatcagaagtacttagtatcaccattgatag
||||| |||| ||||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| ||| | ||||| || ||||||||||||||||||||| | ||| | ||| ||| | | |||| | ||||| | || | | | |||| | | | || ||| |
GTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATCTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGgttaggtgattgaaaactttttagatta-ttgtagttttattattttttgagagaatgtctagcaaggcataaaccttttttttgtgtggtgggattagga-
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G07610.1 (Glycine max), 5'ss of exon 7
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtggcttaagcttcttaattggaatgatatttgtgtttgacattgtgacagatgtaataatcagaagtacttagtatcaccattgatag-
||||| |||| ||||||||| ||||| ||||| || ||||| || ||||||||| |||| ||||| ||| | ||||| || ||||||||||||||||||||| | ||| | || || | | ||||| | ||| | | || | | | | | || | | | ||
ATATGACATATTTCTTCTACCCCCTGGGGAAGACCCCGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGgttaggtgattgaaaactttttagattg-ttatagttatattattttttaagagaatgtctagcaaggcataaatttgaatttgaacttatgaaagaggct
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 6
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgt------ggcttaagcttcttaattggaatgatatttgtgtttgacattg--tgacagatgtaataatcaga--agtacttagtatcac---cattgatag
|||||| || ||||| |||| || || || ||||||||||||||||||||||| || || ||||||||| | ||||| |||||||||||||||||||||||||| | | | || || | | || || | | | || || | | || |||| || | | ||| | || |||
TTATGACATCTATCTGTTACCACCAGGCGAGGATCCTGAAGCATGCCAATCATACCTCAGAATGAGGAACCGAGATGGAAAATACAATCTCATGTTTGAGgtttggccaatacctgtccagactagtttttcttctgtaaacaccatatcatatcaaagctgaacgaatggtttattaatttgatgaatgattaccgttctatgtgttcttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|329112337|gb|JG391805.1|JG391805EST: GCAAATACAATCTCATGTTTGAG GAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAA
genomic: GCAAATACAATCTCATGTTTGAGgtttgactgt ... ttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtggcttaagcttcttaattggaatgatatttgtgtttgacattgtgacagatgtaataatcagaagtacttagtatcaccattgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcagaa