Sequence
atgc intronic sequence ATGC exonic sequenceATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAGgtattatttttttctggtggcacaaaaagaaatatggttgttatatctatattttagtcagctcatcagggacatggaacctcatcagggagcatcctct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G31920.1 (Glycine max), 5'ss of exon 6
ATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAGgtattatttttttctgg-tggcacaaaaagaaatatggttgttatatcta-tattttagtcagct-catcagggacatg----gaacctcatcagggagcatcctct-----------------
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ATGGAAGAGAAAGTGAAAGAAATTGTGGAGATTAAGCAACGCAGTCTGGCAGAAGAGAATCAGAAAACAATGGAAGTTTTGAAAGAAAGgtatctggtaatcttgtctgctatggcaaattgtttgtttattcagtttagtacatgtgacaactgccttagatatatgtttgtagcattcttagtttcttaccattgccaaagtggactatag
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G09890.2 (Glycine max), 5'ss of exon 5
ATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAGgtattatttttttctgg-tggcacaaaaagaaatatggttgttatatcta-tattttagtcagct-catcagggacatggaacctcatcagggagcatcctct
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ATGGAAGAGAAAGTGAAAGAAATTGTGGAGATTAAGCAACGCAGTCTGGCAGAAGAGAATCAGAAAACATTGGAAGTTTTGAAAGAAAGgtatcttgtaatcttgtctgctgtggcaaattgtttgcttattcagtttagtacatgtgacaactgccttagatatatgtttgttgcattcttagtttct---
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S168_102V6.1 (Physcomitrella patens), 5'ss of exon 5
ATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAGgtat------tatttttttctggtggcacaaaaagaaatatggttgt-tatatctatatttt-agtcagct-catcagggacat-ggaacctca---tcagggagcatcctct----------------------------------
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ATGGAGGAGAAAATTAAGGAAATCGTGGAGATGAAACAGCGCAGCTTGGCAGAGGAGAATCAGAAAAGCTTGGAAATATTACGAGACAGgtgtagaaactattaagagctggagatgtttgacgaaatacatctgtgtatatcaaacccttgagtacgttgcattagcaatctcggtgatttagacttcatctgtatcttctgttgaccgcgggtgttggttgattgaggttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30301790|gb|CB978584.1|CB978584EST: CGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAG GGAGCAATTATTGCAGGATCAATTACGACAAGCTAAAGAAAGTGTTTCTAA
genomic: CGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAGgtattatttt ... tctaatgcagGGAGCGATTATTGCAGGATCAATTACGACAAGCTAAAGAAAGTGTTTCTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAGgtattatttttttctggtggcacaaaaagaaatatggttgttatatctatattttagtcagctcatcagggacatggaacctcatcagggagcatcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaca