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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatccataaagttggatatgttaatcaacatttatttccatggatttgcttattcatattttaaagtttctttgatcttcatcttatgtgttcaagt...

Basic information

species Vitis vinifera
transcript Vv17s0000g03870.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 4
TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacat-----------------ccataaagttg-------gatatgttaatcaacatttatttccatggatttgcttattcata-----ttttaaagtttctt-tgatcttcatcttatgtgttcaagt---------------------------------------
  | || ||||| ||||| || ||||| ||||| || ||  |||||||||| |||||||||||||||||||| ||||| || ||||| |||||||| |||||| ||                 ||  |  ||         |||||   |   || |||||||| ||   |||   |  ||  ||     |  | | | | |   |    |   |  ||||||||    |                                       
ACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGAAATTGTTGGAACCACAAGATTGTGTAGCACATATCCTTCCAGTTATTGTCAATTTCTCCCAGgtaaattacacccctacttggtacctcagtgtcatctacttgatatcacatataatatttatttgcagacattcattagttgctagaggttcctgatgctccgagttgcttctgttgtatgtgttaccataattatgacatcttttactctctgtaactcattaaatag

upper sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 4
TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatcc--------------------ataaa-gttgg--------atatgttaatcaacatttatttccatggat-ttgctt-attcatattt---taaagtttcttt---gatcttcatcttatgtgttcaagt-------------------------------------------------------------
  |  ||||||| |||||||||||||| ||||| || ||| ||||||| || |||||||||| |||||||||||| || || ||||| ||||||||||||||| |||                     ||||| |||||        |||   |  |||| | | |||  | |  |  || ||  | | | ||||   |||  | |  |    ||   | || | ||||| | ||||                                                             
GCGACTATTGGCAGTTGAGGGTTGTGCTGCTCTTGGGAAGTTGTTGGAGCCCCAAGATTGTGCAGCACATATTCTCCCAGTTATTGTAAATTTCTCTCAGgtatatcttacacacttttggtggcttaataaatgttgggagaaaagataaagttgtcaatactaattctcgtaaaaattactagagtaagatttccataagatctgctactagacaataatttcatgtgcttaagtttcagcacactaccatacatggttaatgatttcaattgcttatgttttcttaacatctcag

upper sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 4
TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacat--ccataaagttgga-----tatgttaatcaacatttatttccatggatttgcttattcatattttaaagtttctttgatcttcatcttatgtgttcaagt-----------------------------------------------------------------------------------------
  | || ||||||||||| |||||||| ||||| || ||  ||||||| || |||||||||||||| || |||||||| || ||||| |||||||| |||||||||  |    | ||||||     ||  ||   || ||  || ||   |   ||||   ||  ||  ||   ||     ||  |  |      | ||    || |                                                                                         
GCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAAATTGTTGGAGCCACAAGATTGTGTAGCTCACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgctcccatgttggaccctatacattttgcagcaagtaatttgctttctttgtggatatattattgggagacatgtttttagttgctagaggttgataatttctcggagtcgcctcttagttttgcaacttgctgcagttcagtgcattaccgctgataaatgctacttgcatatactcgctttgtttag

upper sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 4
TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacat--ccataaagttggatatgttaatcaacatttatttccatggatttgcttattcatattttaaagtttctttgatcttcatcttatgtgttcaagt-----
  |  | ||||||||||| || ||||| || || || ||  |||||||||| |||||||| |||||||| |||||||| || ||||| |||||||| |||||||||  |    | ||||||    |  |||      |    | |   ||||||||  |  | | |  || | |  ||   |   | |  |   ||   ||      
GCGTCTGTTGGCTGTTGAAGGCTGTGCTGCCCTTGGTAAATTGTTGGAACCACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgctcccatgttggacccatacatc-----ctgcagcaagtaatttgctttctt-tgtctggaaatattattc-cccagaccccacccgtgggagcttcca

upper sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 3
TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatccataaagttggatatgttaatcaacatttatttccatggatttgcttattcatattttaaagtttctttgatcttcat-cttatgtgttcaagt---
| || || | ||||||||||||||||||||||| |||||  |||||||||||||||||||||| |||||||||||||| || || || ||||| ||||||||   |     |      |||   | || |  || ||| |  |  |||| |   ||  ||  |  | |     ||||      |  || ||| |   | ||   
TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGAAAATTGTTGGAACCTCAAGATTGTGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatacactgat-actatatatgt--agagattagag-atatatcctccatatccattttgtggccaacactaatgaggggatgtctt

upper sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatccataa--agttggatatgttaatcaacatt-tatttccatggatttgct-tattcatattttaaagtttctttgatcttcatcttatgtgttcaagt
| || || | ||||||||||||||||||||||| || ||  ||||||||||||||||||| || |||||||||||||| || || || ||||| ||||||||   |     |  |||   |    |  |   | | | ||| |  |  || | |   |||   |    ||    || | ||  |  || || ||| |   |   
TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatactgatacactgatactatatatgtagagactagaggtatatcttccatatccattttgtggccaaca-ctaatgagagga---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156738161|gb|EV242282.1|EV242282
EST:     CTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAG                         GATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTA
genomic: CTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatccat ... tcctgaacagGATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTA
EST: gi|110696169|gb|EE075018.1|EE075018
EST:     CTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAA                         GATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTA
genomic: CTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatccat ... tcctgaacagGATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTA
EST: gi|30302057|gb|CB978851.1|CB978851
EST:     CTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAG                         GATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTA
genomic: CTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatccat ... tcctgaacagGATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTA