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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaattttgttccaaccatgcttctcactagctgcttcatgttattaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcag

Basic information

species Vitis vinifera
transcript Vv17s0000g03310.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g14070.1 (Oryza sativa), 5'ss of exon 5
CTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaattttgttccaaccatgcttctcactagctgcttcatgttattaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcag
|||||| ||||| ||||| ||||| ||||| || |||||||||||||| || ||  | || ||||||||||||||  ||||||| ||| |  ||||||||||||  ||           ||| || || |     |   | |   ||||     ||    || | | || ||  |     |||  |        ||  |||||   |  ||| || ||| | |                                                                    
CTTGCCTTTCATAACTGCTACTGCTGATGGGCCTAAACACATCGAGACAACTCTCTCCAGAGCCAAATTTGAGGAGCTATGTTCGGACCTCATTGATAGgtaaaatat--------ggacattctgctga-----tatataagcctattgcttaggaaaatgatttgcattttctcaaattttttt--------aaggcttga--ctaatatgtttcttattgatag----------------------------------------------------------------

upper sequence: Vv17s0000g03310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G001500_T02 (Zea mays), 5'ss of exon 5
CTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaattttgttccaaccatgcttct-cactagctgcttcatgttattaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcag
| | || ||||||||||| ||||| ||||| || |||||||||||| | |||||  | || |||||||| |||||| ||||||| ||| |  | || |||||          ||| | |  |  ||||   ||  ||||||  ||     ||| ||  |    || || ||||        | |  |||| | |  | |     | || | |    | |||  | | || || | | ||||| |                                                
CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAACCCTCTCGAGAGCCAAATTCGAGGAACTATGTTCAGACCTTATAGACAGgta-------ccattctatcagtatttctgtgctcactgctttttga----aaattgtct----ctctataatt-----ccatatgatctatgtatgaga----gatttttcaaaggctttgctgacttt-cattctggtgacag------------------------------------------------

upper sequence: Vv17s0000g03310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G00410.1 (Glycine max), 5'ss of exon 4
CTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaattttgttccaaccatgcttctcactagctgcttcatgtt-attaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcag
 ||||| ||||| |||||||| || |||||||||||||| || ||||| ||| | |||||||| |||||||||||||| ||||| ||  | ||||| |||||  |||||| | |  |   |||     ||  |  |   | | | | |  |||||  |  |  ||| |  | || | ||  || |                                                                                                           
TTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAGgtactgaattt-gatgaatggatggcaaacatgatttcactaaagctgaacaaactactcag--ctacagtaatacttgtgtttcag----------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543152|gb|CF511384.1|CF511384
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|110689187|gb|EE065194.1|EE065194
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|110360709|gb|EC924030.1|EC924030
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|26263790|gb|CA814853.1|CA814853
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|110376029|gb|EC941068.1|EC941068
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|56408917|gb|CX017169.1|CX017169
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|110376831|gb|EC941910.1|EC941910
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|110374207|gb|EC938830.1|EC938830
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|110684783|gb|EE062458.1|EE062458
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: gi|351024502|gb|FQ426311.1|FQ426311
EST:     ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG                         GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA