Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTTTTGGAGCTACAAGATGATGGAAACCTGACAACATCAGATGATCCTCCTGTTGTATTTGGGTCCTTAGATGGGGACTTCATACAAAAGgtttggttaatgcagatttataaataaaatgcctacagctgatcaggtgtttaatttggccttcaatcctttaacctaattagaatgattatctgtacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01420.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G17890.1 (Glycine max), 5'ss of exon 5
GTGGTTTTGGAGCTACAAGATGATGGAAACCTGACAACATCAGATGATCCTCCTGTTGTATTTGGGTCCTTAGATGGGGACTTCATACAAAAGgtttggttaatgcagatttataaataaaatgcctacagctgatcaggtgtttaatttggccttcaatcctttaacctaattagaatgattatctgtacct----
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GTGGTTTTGGAGCTTCAAGAAGATGGAAAACTGACTACCTCAGATGATCCTCCTGTGGTGTTTGGCTGTTTAGATGGAAGCTTTATACAACAGgtttgtttgaaagtggtctctattttaaat--tggcatccgat-gcctaatcgttatgatttgtgaggctc-aaccaattgaaagtttctgccactatataatc
upper sequence: Vv17s0000g01420.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G37160.1 (Glycine max), 5'ss of exon 5
GTGGTTTTGGAGCTACAAGATGATGGAAACCTGACAACATCAGATGATCCTCCTGTTGTATTTGGGTCCTTAGATGGGGACTTCATACAAAAGgtttggttaatgcagatttataaataaaatgcctacagctgatcaggtgtttaatttggccttcaatcctttaacctaattagaatgat-tatctgtacct-
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GTGGTTTTGGAGCTTCAAGACGATGGAAAACTGACTACCTCGGATGATCCTCCTATGGTATTTGGCTGTTTAGATGGAAGCTTTATACAACAGgtttgtttgaaagaggtctatatataat-tgtaaattggc-atcctatgcttaatctagtattgacttgtgaggctcatttaattggaagtttctgctactaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690618|gb|EC955074.1|EC955074EST: ATGATCCTCCTGTTGTATTTGGGTCCTTAGATGGGGACTTCATACAAAAG TCTGGGCTCTGTTCAGGAAACCTTCTACGATTTGCTGTTAGTGATGGTGGA
genomic: ATGATCCTCCTGTTGTATTTGGGTCCTTAGATGGGGACTTCATACAAAAGgtttggttaa ... aattttccagTCTGGGCTCTGTTCAGGAAACCTTCTACGATTTGCTGTTAGTGATGGTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTGGTTTTGGAGCTACAAGATGATGGAAACCTGACAACATCAGATGATCCTCCTGTTGTATTTGGGTCCTTAGATGGGGACTTCATACAAAAGgtttggttaatgcagatttataaataaaatgcctacagctgatcaggtgtttaatttggccttcaatcctttaacctaattagaatgattatctgtacct
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