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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAACTGGTGGCAGTTTCGAACTCTGTATCATTTGCAAATCCTAAAGCCCCCCTTTATCCACGCCTTGCTCTGGGAAAGGCTTGGAATGAAgtaagtttatcctaattcatctcttttgcagggaaaattttgctacttggatggtattttgtttcattagaaaactagaattgttgacatctaaacttacatatacccagaattgttagtctcattttcttgcattttctgttgtcttacag

Basic information

species Vitis vinifera
transcript Vv17s0000g01400.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G17860.1 (Glycine max), 5'ss of exon 5
CCAAAACTGGTGGCAGTTTCGAACTCTGTATCATTTGCAAATCCTAAAGCCCCCCTTTATCCACGCCTTGCTCTGGGAAAGGCTTGGAATGAAgtaagtttatcctaattcatctcttttgcagggaaaattttgctacttggatggtattttgtttcattagaaaactagaattgttg-acatctaaacttacata-tacccagaattgttagtctcattttcttgcattttctgttgtcttacag
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CCTAGACTTGTGGCAATTTCGAATTCCATATCATTTGCAAATCCTAAAGCACCTGTGTATCCGCGCCTTGCTCTAGGAAAATCTTGGGATGAAgtaagtttatc--aata-------tttgctagagaacctt------------ggttttatgtttctccaattagttgtattcaccacaagtctatattatcgtaattttcagaccacttag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714814|gb|FC063262.1|FC063262
EST:     CTAAAGCCCCCCTTTATCCACGCCTTGCTCTGGGCAAGGCTTGGAATGAA                         ATGGCAGTGACATGGACAAGTGGCTATAACATAGATGAAGCCGTTCCATTT
genomic: CTAAAGCCCCCCTTTATCCACGCCTTGCTCTGGGAAAGGCTTGGAATGAAgtaagtttat ... tgtcttacagATGGCAGTGACATGGACAAGTGGCTATAACATAGATGAAGCCGTTCCATTT