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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag

Basic information

species Vitis vinifera
transcript Vv17s0000g00500.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatat-tgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag
 || |||   |||||||  |||||||| |||||||| || ||  |||| |||||||| |||||||| |||||||| ||| |||| | | |||||||||||||     |  |   ||| ||  || | |  ||| |         || ||||    ||||   |  |||   ||||| | |                                 
TGAAGAACTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTCTTCGGCATGGGTTATGTGACGAACTCTGCGATCATTCCTGCCTTGATTGGGAAGgtcagtggc-agagaaactgccatgttttcataattcctgttctttctgtacattatggagct--aatatattattgatttcag-----------------------------

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattg-tacaaggc-ttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag
|||||| |  ||||||  ||||||||||||||||||||| ||  | ||||||||||| ||||| |||||||| || ||| ||||   |||  | || ||||||   |||     | || | | |  | | |  | |   | ||  | | |   ||   |   ||| | ||  | | | | ||| | |  || |||                     
GGAGGAGTTGGTTGCACGCTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCGGCCATCATTCCTTGCCTAGTAGGAAAGgtacaatcaaaacgtcaagtggttgatctatccagtaacagaaaacatgactaaacttagcagcaattaa--catgactaaatttcatgttattccag------------------

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag
 || ||    |||||||  |||||||| |||||||| || ||  | ||||||||||| |||||||| |||||||| ||| |||| | | || ||||||||||      | |   | | ||   | || |   || ||     ||| | ||   | |||   |  |||   ||||| | ||                                
TGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTATGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGGAAGgtccgtgat-agagagactgccgt-gttttctttctatt---cttttctacatcctggagct--aatgtattattgattgcag-----------------------------

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag
 || ||   ||||||||  |||||||| |||||||| || ||  | ||||||||||||||||||||||||||||||||| |||| |  ||| ||||||||||||       | ||  |||  |   | |||  |   |||   || |||  ||         |||  |||  |    | |  |    ||    | ||||             
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgt-----tctatgttgtgaagatatatgct---caaactttctgttttgttcttttcatgagctctgcagctgaggcta----ctgtaataattgcag----------

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G142030_T01 (Zea mays), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatat-tgtctatattgtacaaggcttatgtaatgcatgggcattgaatt-ctttattcaatgtgaaattcttctttcattgtgatgattcacag--------
|||||| |    ||||   |||||||||||||||||||| ||  ||||||||||||| ||||| ||||||||||| ||| ||||   ||| ||||| |||||       |  | ||||   ||| | || |  || |  ||    |   |||  |  ||  |||   || || |||  ||  |||   |  || || ||| |     ||  ||         
GGAGGAGTTGACTGCACGTTTTGTTGGAAAGCCTGCTGCTATCCTCTTTGGCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgt------ctgatcaaatgcttatatatccactttatgaaaaatgtggctaac-cgaggtgattactttactgtatctaaactgaggatgatcatttattttacctttttgcattatttcag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G137556_T01 (Zea mays), 5'ss of exon 4
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaa--tgtgaaattcttctttcattgtgatgattcacag--------
 ||||| |    |||    |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||||||| ||| ||||   ||| ||||| |||||  |   | |  |    | || || | ||||   |  |      ||||     |   | ||  | |  | |||  ||  || |  | |  |  || ||| |     ||  ||         
AGAGGAGTTGCCTGCGCGTTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCTGCCATCATTCCATGCCTAATTGGAAAGgt--ttgatcaactgctattatgttatgtatacatttaactaaaaatgtggctaaactgaatc-attagtatatctaaattgagggaatgattgtttattttacctttttgcaacattccag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G067257_T01 (Zea mays), 5'ss of exon 7
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattgtacaaggcttatg-taatgcatgggcattgaattctttattcaa--tgtgaaattcttctttcattgtgatgattcacag--------
 ||||| |    |||    |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||||||| ||| ||||   ||| ||||| ||||| |  |||  |  ||| ||   |  ||| || |||  || |    | ||   |  |    | | | | |  | |||  ||  || |  | |  |  || ||| |     ||  ||         
AGAGGAGTTGCCTGCGCGTTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatat--gttatgtatacatttaactaaaaatgtggctaaactgaagtaatcattagtatatctaaattgagggaatgattgtttattttacctttttgcaacattccag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G152888_T01 (Zea mays), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattgtacaaggcttatg-taatgcatgggcattgaattctttattcaa--tgtgaaattcttctttcattgtgatgattcacag--------
|||||| |  | |||    |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||||||| ||| ||||   ||| ||||| ||||| |  |||  |  ||| ||   |  ||| || |||  || |    | ||   |  |    | | | | |  | |||  ||  || |  | |  |  || ||| |     ||  ||         
GGAGGAGTTGGCTGCGCGTTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatat--gttatgtatacatttaactaaaaatgtggctaaactgaagtaatcattattatatctaaattgagggaatgattgtttattttacctttttgcaacattccag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G357734_T03 (Zea mays), 5'ss of exon 11
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattgtacaaggcttatg-taatgcatgggcattgaattctttattcaa--tgtgaaattcttctttcattgtgatgattcacag--------
 ||||| |    |||    ||||||||||||| |||||| ||  | ||||||||||| ||||| ||||||||||| ||| ||||   ||| ||||| ||||| |  |||  |  ||| ||   |  ||| || |||  || |    | ||   |  |    | | | | |  | |||  ||  || |  | |  |  || ||| |     ||  ||         
AGAGGAGTTGCCTGCGCGTTTTGTTGGAAAGCTTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatat--gttatgtatacatttaactaaaaatgtggctaaactgaagtaatcattagtatatctaaattgagggaatgattgtttattttacctttttgcaacattccag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 3
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattgtacaaggcttatg-taatgcatgggcattgaattctttattcaatgtgaaattct--tctttcattgtgatgattcacag--------
|||||| |    |||    |||||||||||||||||||| ||  | ||||||||| | ||||| ||||||||||| ||| ||||   ||| ||||| ||||| |  |||  |  ||| ||   |  ||| || |||  || |   || ||   |  |    | | | | |  | |||  ||  |||  |  |  |  || ||| |     ||  ||         
GGAGGAGTTGCCTGCGCGTTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGTGTTATGTTACAAACTCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatat--gttatgtatacatttaactaaaattgtggctaaactgaagtaatcattattatatataaattgaggtaatgattgtttattttacctttttgcaacattcgag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G370377_T01 (Zea mays), 5'ss of exon 10
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattgtacaaggcttatg--taatgcatgggcattga-attctttattcaatgtgaaattcttctttcattgtgatgattcacag
|||||| |    |||    |||||||||||||||||||| ||  | ||||||||| | ||||| ||||||||||| ||| ||||   ||| ||||| ||||| |  |||  |  ||| ||   |  ||| || |||  || |    | ||  |||      |  ||    ||| | |||  | || |  | |  |  || ||               
GGAGGAGTTGCCTGCGCGTTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGTGTTATGTTACAAACTCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatat--gttatgtatacatttaactaaaaatgtggctaaactgaagtaatcattattatatataaattgagggaatgattgtttat---------------

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G891276_T01 (Zea mays), 5'ss of exon 3
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtat--tcagttatttaaattgatattgtctatattgtacaaggcttatg-taatgcatgggcattgaattctttattcaa--tgtgaaattcttctttcattgtgatgattcacag--------
 ||||| |  | ||||   ||||||||||||||| |||| ||  | ||||||||||| ||||| ||||| ||||| ||| ||||   ||| ||||| ||||| |  |||  |  ||| ||   |  ||| || |||  || |    | ||   |  |    | | | | |  | |||  ||  || |  | |  |  || ||| |     ||  ||         
AGAGGAGTTGGCTGCACGTTTTGTTGGAAAGCCTCCTGCTATCCTATTTGGCATGGGTTATGTTACAAAATCTGCCATCATTCCATGCCTAATTGGAAAGgtttgatcaactgcttatat--gttatgtatacatttaactaaaaatgtggctaaactgaagtaatcattattatatctaaattgagggaatgattgtttattttacctttttgcaacatttcag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattctt-ctttcattgtgatgattcacag
 |||||||||||| | |  ||||| ||||||||||||||  | || ||||||||||||||||  ||||| || |||||| |||| ||| ||||||| ||||||| || |  ||||           | |||  ||   ||||| |||||  ||  |      | ||  |  |  | ||  ||| ||| || | |    |||  || |  ||||
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggttta--------ccctttatgatg---aaggcgtatgt--tgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttg-tatacag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 1
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag
 |||||||||||||| || ||||| ||||| ||||||||  | || ||||||||||||||  | |||||||| |||||| || | ||| ||||||| ||||||             ||  |||     | |  | |  || |||||||| |         |   ||   | | ||   | |   |   |  || ||  |  ||| |  ||||
TGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCTGCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGCAAGgta-------------atgcatacaccttgtgatatg-aacgcttatgttac-------taccaaaacatatgtt---tttagtagcttaattacacagccatg-tatacag

upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag
 ||||| |||||||| || | ||| ||| | ||||||||  |  | ||||||||||| ||||  |||||||| |||||| |||| ||| ||||||| ||||||   |      ||   || ||     | |  || |||   ||||||| |  |        |   || ||    |  | ||   | |    |  |  |             
TGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGgtaagta------tatgctgctacatcttgtgatggaca---cttatgttactcccaaaacctatgtttttgtagctttatgtgctgccatctgtacag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34542640|gb|CF510872.1|CF510872
EST:     GCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAN                         NNNNNNTTGATAATTAGTGATTCTTTGAACCACAACTCAATTGTCAATGGT
genomic: GCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagtt ... tgattcacagGGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGT
EST: gi|71874609|gb|DT023664.1|DT023664
EST:     GCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAN                         NNNNNNTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGT
genomic: GCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagtt ... tgattcacagGGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGT
EST: gi|161717233|gb|FC067239.1|FC067239
EST:     GCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAN                         NNNNNNTTGATAATTAGTGATTCTTTGAAC-ACAACTC-ATTGTCAATGGT
genomic: GCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagtt ... tgattcacagGGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGT