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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTTCACCCGTGGTCTTCCTCTTCGTATAGTCATGATTGGAACCCTTACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttctcctcctttcattgattaaaattcttctttgttttgccatgttcctggtactatctaacatgtttgaaggatctatttctgggtagttacattcactgtcctgttcccaattttatttgaataaaatgctaacaaggttttgttgctatccatag

Basic information

species Vitis vinifera
transcript Vv17s0000g00400.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ31006 (Selaginella moellendorffii), 5'ss of exon 5
GTCTCTTCACCCGTGGTCTTCCTCTTCGTATAGTCATGATTGGAACCCTTACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttctc---ctcctttcattgattaaaattcttctttgttttgccatgttcctggtactatctaacatgtttgaaggatctatttctgggtagttacattcactgtcctgttcccaattttatttgaataaaatgctaacaaggttttgttgctatccatag
 |||||||||||| || || || || ||||| || ||||||||||| || || ||||| || ||||| ||||||||  | |||||||| || ||||| |||||||||||||   ||| | || |      ||||      |   | | |||                                                                                                                    
CTCTCTTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACACTCACTGGAGCACAGTGGGGAATCTACGACGCCTTCAAAGTCTTCGTTGGACTgtaagtttctcgctctcatctcttgtggggaaatctcaaatctctattccag-------------------------------------------------------------------------------------------------------------------

upper sequence: Vv17s0000g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ34707 (Selaginella moellendorffii), 5'ss of exon 5
GTCTCTTCACCCGTGGTCTTCCTCTTCGTATAGTCATGATTGGAACCCTTACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttctcctcctttcattgattaaaattcttctttgttttgccatgttcctggtactatctaacatgtttgaaggatctatttctgggtagttacattcactgtcctgttcccaattttatttgaataaaatgctaacaaggttttgttgctatccatag
 |||||||||||| || || || || ||||| || ||||||||||| || || ||||| || ||||| ||||||||  | |||||||| || ||||| |||||||||||||   || || |      ||||      |   | | |||                                                                                                                    
CTCTCTTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACACTCACTGGAGCACAGTGGGGAATCTACGACGCCTTCAAAGTCTTCGTTGGACTgtaagtttctcgctctctcttgtggggaaatctcaaatctctattccag-------------------------------------------------------------------------------------------------------------------

upper sequence: Vv17s0000g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ34706 (Selaginella moellendorffii), 5'ss of exon 5
GTCTCTTCACCCGTGGTCTTCCTCTTCGTATAGTCATGATTGGAACCCTTACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttctc----ctcctttcattgattaaaattcttctttgttttgccatgttcctggtactatctaacatgtttgaaggatctatttctgggtagttacattcactgtcctgttcccaattttatttgaataaaatgctaacaaggttttgttgctatccatag
 |||| ||||||| || || || || ||||| || ||||||||||| || || ||||| || ||||  ||||||||  | |||||||| || ||||| ||||||||||||      | || || |||    || ||||    | |  |  |  || |    | | |||  |                                                                                                 
CTCTCGTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACTCTCACTGGAGCGCAGTGGGTAATCTACGACGCCTTCAAAGTCTTCGTTGGACTgtaagtttcttgctatttctctccttgtgggaagttctcaaatctcctctctcgtgctc--ttccatcccag------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419582|gb|EC985821.1|EC985821
EST:     ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCT                         GCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGAAAA
genomic: ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttct ... ctatccatagGCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
EST: gi|22015508|gb|BQ800542.1|BQ800542
EST:     ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCT                         GCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGAAAA
genomic: ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttct ... ctatccatagGCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
EST: gi|110394034|gb|EC958407.1|EC958407
EST:     ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCT                         GCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGAAAA
genomic: ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttct ... ctatccatagGCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
EST: gi|30305673|gb|CB982467.1|CB982467
EST:     ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCT                         GCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
genomic: ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttct ... ctatccatagGCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
EST: gi|160482081|gb|EY255058.1|EY255058
EST:     ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCT                         GCCAACAACCGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
genomic: ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttct ... ctatccatagGCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
EST: gi|110706767|gb|EE082591.1|EE082591
EST:     ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCT                         GCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
genomic: ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttct ... ctatccatagGCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA
EST: gi|110405066|gb|EC970596.1|EC970596
EST:     ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCT                         GCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGAAAA
genomic: ACAGGAGCCCAATGGGGTATCTACGATACTTTCAAAGTTTTTGTTGGGCTgtaagtttct ... ctatccatagGCCAACAACTGGAGGTGTTACTCCTGCTCCTGCTGCCACTGTTCCTGCAAA