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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACAGCATTTGGTATGAACAGTGTGGTTTATGTGCCTCGAATCAAACTAGACACAGTAACAGCATTATCTGCATTTTGTGAAAAGGCCAGCATGgtgagcacagggtgagatggtttactttatttttgtttcctacatttttctttgtcgggtttcgataaaatcatcaaagcaagattttgtgtaccagttcctttgatgcacggggttactgtctcag

Basic information

species Vitis vinifera
transcript Vv16s0100g00480.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G38370.1 (Glycine max), 5'ss of exon 5
GCAACAGCATTTGGTATGAACAGTGTGGTTTATGTGCCTCGAATCAAACTAGACACAGTAACAGCATTATCTGCATTTTGTGAAAAGGCCAGCATGgtgagcacagggtgagatggtttactttatttt--tgtttcct--acatttttctttgtcgggtttcgataaaatcatcaaagcaagattttgtgtaccagttcctttgatgcacggggttactgtctcag
|||||||||||||| ||||| ||  | ||||| ||||| ||||||||| ||||||| ||| | |||||||||||||| || || |||||||||||||||||||| ||||||||    | |    | |    ||||| ||  ||| | ||  |  ||   |||| ||   ||  ||     |    |||    ||                                 
GCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATGgtgagcactgggtgagacaaataagaacaatacaatgtttacttgacaatatttctgttctcctttctattttattgtctgtttagttattttcacactt-------------------------------

upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G29480.2 (Glycine max), 5'ss of exon 4
GCAACAGCATTTGGTATGAACAGTGTGGTTTATGTGCCTCGAATCAAACTAGACACAGTAACAGCATTATCTGCATTTTGTGAAAAGGCCAGCATGgtgagcacagggtgagatggtttactttatttttgtttcctacatttttctttgtcgggtttcgataaaatcatcaaagcaagattttgtgtaccagttcctttgatgcacggggttactgtctcag
|||||||||||||| ||||| || || ||||| ||||||| ||||||| ||||||| ||| | |||||||||||||| || || |||||||||||||||||||  ||||||||    | |    | |        | |  |||   |        ||  | | |  |  || |    |   ||||| |    | |  ||| |  | |                
GCAACAGCATTTGGCATGAAAAGCGTAGTTTACGTGCCTCAAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGACAAGGCCAGCATGgtgagcatggggtgagacaaataagaacaata-------caatgtttacttcaaattatttctgttcaccttttccattttatggtttgttt----ggttatttcacactc----------------

upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G52100.1 (Arabidopsis thaliana), 5'ss of exon 5
GCAACAGCATTTGGTATGAACAGTGTGGTTTATGTGCCTCGAATCAAACTAGACACAGTAACAGCATTATCTGCATTTTGTGAAAAGGCCAGCATGgtgagcacagggtgagatggtttactttatttttgtttcctacatt---tttctttgtcgggtttcgataaaatcatcaaagcaagatt-ttgtgtaccagttcctttgatgcacggggttactgtctcag------------
||||| |||||||| ||||| |||||||| ||||| ||||| || || | ||| |||||| | || || |||||| | ||||| ||||||| |||||||||||||||||||||||   ||||      || ||   ||| ||   |||||||||  |||  |||     || | ||   |  ||| ||       || |  ||   |  |      |   ||||| |            
GCAACGGCATTTGGGATGAAGAGTGTGGTGTATGTACCTCGGATTAAGCCAGAGACAGTATCTGCGTTGTCTGCACTATGTGACAAGGCCACCATGgtgagcacagggtgagatgagatactcgcagattattcattacgttccctttctttgtgaggt--cgagtctgtcctgaagcaacaattgttagacgagagatggttcactaaaatctaatttcgtctctgcttgcgttatag