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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTAACCGATGCAGTCTTTGCAGAAATGGTCAATACAATCTATGCAGAGAAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttccttgaactnggagtgaccatttggggatgatgcctagccttgacaatatgctctttcttgtactag

Basic information

species Vitis vinifera
transcript Vv16s0100g00290.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188548|gb|CF607897.1|CF607897
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTAC
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTAC
EST: gi|110702722|gb|EE078942.1|EE078942
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|110408851|gb|EC974498.1|EC974498
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|110401034|gb|EC967627.1|EC967627
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|71890669|gb|DT039724.1|DT039724
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|110702886|gb|EE079247.1|EE079247
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|110711540|gb|EE088133.1|EE088133
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|110712208|gb|EE089569.1|EE089569
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|26257801|gb|CA808864.1|CA808864
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|110712986|gb|EE088512.1|EE088512
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|37189545|gb|CF608894.1|CF608894
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGA
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGA
EST: gi|46917777|gb|CN547106.1|CN547106
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|110713392|gb|EE089275.1|EE089275
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
EST: gi|71884639|gb|DT033694.1|DT033694
EST:     AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAG                         GTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG
genomic: AAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnn ... cttgtactagGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTAACCGATGCAGTCTTTGCAGAAATGGTCAATACAATCTATGCAGAGAAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGgtaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttccttgaactnggagtgaccatttggggatgatgcctagccttgacaatatgctctttcttgtactag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC