1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTATGGCGGCCCAAGCGTGCAGCTTGTTTGTGATTCTTGGATGAATACAGTTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAGgtcagcattatcttactaatgcctcagaccatcattcttatatgtatcatactttccaaaatggtattgactggcctgaatgctttaccttgcag
species | Vitis vinifera |
transcript | Vv16s0098g01880.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAG TTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTGEST: gi|110357338|gb|EC920811.1|EC920811
genomic: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAGgtcagcatta ... taccttgcagTTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTG
EST: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAG TTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTGEST: gi|110372019|gb|EC936160.1|EC936160
genomic: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAGgtcagcatta ... taccttgcagTTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTG
EST: GTAGCAGAGGCATCCTAGTGTGGAAG TTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTGEST: gi|27583442|gb|CB006137.1|CB006137
genomic: GTAGCAGAGGCATCCTAGTGTGGAAGgtcagcatta ... taccttgcagTTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTG
EST: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAG TTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTGEST: gi|110429812|gb|EC996319.1|EC996319
genomic: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAGgtcagcatta ... taccttgcagTTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTG
EST: GACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAG TTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTGEST: gi|110356744|gb|EC919793.1|EC919793
genomic: GACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAGgtcagcatta ... taccttgcagTTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTG
EST: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAG TTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTG
genomic: TTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAGgtcagcatta ... taccttgcagTTAGATAACAGAGGAACCGCCCGCCGTGGACTAAAGTTCGAAAGTTGCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGGCGGCCCAAGCGTGCAGCTTGTTTGTGATTCTTGGATGAATACAGTTGACATGAGAGCCCAGTATTTACGTAGCAGAGGCATCCTAGTGTGGAAGgtcagcattatcttactaatgcctcagaccatcattcttatatgtatcatactttccaaaatggtattgactggcctgaatgctttaccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG