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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACAAGAAGAGTACATCAATGGAATTACAGATGTTGAAGGTGTTGGGGGTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttcgcctccttcaactagagtcgaaccatatagtccctataatgatgggtttccattcgaattctactaataaacttaccctttttgtttgtctgaattccatctttgttcaaacaaattagctaatgaactatttcttaaactcttttatgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g02520.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G31370.1 (Glycine max), 5'ss of exon 5
CACACAAGAAGAGTACATCAATGGAATTACAGATGTTGAAGGTGTTGGGGGTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttcgcctccttcaactagagtcgaaccatatagtccctataatgatgggt----ttccattcgaattctactaataaacttaccctttttgtttgtctgaattccatctttgttcaaacaaattagctaatgaactatttcttaaactcttttatgcag
||||||||| ||||| || ||||| ||||| |||||||| ||||||   |||||||   || ||||||||||| |||| |||||||||||||||||||||||||||  ||  |||||      |||         |||  || || | |||||  ||    ||  |||    | |||  | | |    | | ||  |   |||| || ||   |                                                    
CACACAAGAGGAGTATATTAATGGGATTACTGATGTTGATGGTGTTAATGGTGATAATAGGAGGCAACTTGCTGTTCTAAGACTTGCTCTTGATGATGTGgtaattactcaactcct------aga---------tattctctctttgatgataagtgaaatttgattaacctactaaaagttagtgaaactttgatagatgtcagagttatttg---------------------------------------------------

upper sequence: Vv16s0050g02520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G08390.1 (Glycine max), 5'ss of exon 4
CACACAAGAAGAGTACATCAATGGAATTACAGATGTTGAAGGTGTTGGGGGTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttcgcctccttcaactagagtcgaaccatatagtccctataatga-tgggtttccattcgaattctactaataaacttaccctttttgtttgtctgaattccatctttgttcaaacaaattagctaatgaactatttcttaaactcttttatgcag
||| ||||| ||||| || ||||| ||||| |||||||| ||||||   |||||||   || ||||||||||| |||| |||||||||||||||||||||||||||  ||  |||||| |           |   | |  |    || || | ||   ||  |||   || |||  | | |    | | |   |   ||||  | ||                                                        
CACGCAAGAGGAGTATATTAATGGGATTACTGATGTTGATGGTGTTAATGGTGATAATAGGAGGCAACTTGCTGTTCTAAGACTTGCTCTTGATGATGTGgtaattactcaactccttgat----------attctctctttttgatgataagtgaaatttgattaacatgctagaagttagtgaaacttagataaatgtcaaagttttt-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45368264|gb|CK906623.1|CK906623
EST:     GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
EST: gi|30135385|gb|CB920723.1|CB920723
EST:     GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
EST: gi|34550585|gb|CF518803.1|CF518803
EST:     GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
EST: gi|34363418|gb|CF405003.1|CF405003
EST:     GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
EST: gi|28964721|gb|CB343754.1|CB343754
EST:     GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
EST: gi|110375753|gb|EC940766.1|EC940766
EST:     GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
EST: gi|34550673|gb|CF518891.1|CF518891
EST:     GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: GTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
EST: gi|110719640|gb|EE094946.1|EE094946
EST:     GTGATANGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTG                         CTTGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT
genomic: -TGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGgtaattcttc ... ttttatgcagCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGT