1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTTATGCAGTCTCCTTTGTTAAAGATGCAAAAGTAGTCCATGAATTGAAGAACTATCTGAAAAgtaaatacttaggatattcatttggaaataactaaataacttgcttgatctgtaatttgcttcaaattttaccacttataatctttaccttgtttcggcag
species | Vitis vinifera |
transcript | Vv16s0050g02180.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTTGTTAAAGATGCGAAAGTAGTCCATGAATTGAAGAACTATCTGAAAA GCTGTAATGCAGATATCCATGTCATTGTTAAAATTTGAA-GTGCCGACTCCEST: gi|110698146|gb|EE075377.1|EE075377
genomic: CTTTGTTAAAGATGCAAAAGTAGTCCATGAATTGAAGAACTATCTGAAAAgtaaatactt ... gtttcggcagGCTGTAATGCAGATATCCATGTCATTGTTAAAATT-GAAAGTGCCGACTCC
EST: CTTTGTTAAAGATGCGAAAGTAGTCCATGAATTGAAGAACTATCTGAAAA GCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCA
genomic: CTTTGTTAAAGATGCAAAAGTAGTCCATGAATTGAAGAACTATCTGAAAAgtaaatactt ... gtttcggcagGCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTTATGCAGTCTCCTTTGTTAAAGATGCAAAAGTAGTCCATGAATTGAAGAACTATCTGAAAAgtaaatacttaggatattcatttggaaataactaaataacttgcttgatctgtaatttgcttcaaattttaccacttataatctttaccttgtttcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC