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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTGACGGATAAGAGTGATGTCTATAGCTTTGGAGTTCTTATCATGGAGATAATCTCTGGTAGAACCCCTCTAGATTACGGGCAACCCCAATCAGAGgtcgctgatcttaaattttttatacttagtgttgagctgcattctcatctgtgttcccctgtttcatgaagtaaaatgaattcttggtttcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01130.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ27863 (Selaginella moellendorffii), 5'ss of exon 6
AATTTTGACGGATAAGAGTGATGTCTATAGCTTTGGAGTTCTTATCATGGAGATAATCTCTGGTAGAACCCCTCTAGATTACGGGCAACCCCAATCAGAGgtcgctgatcttaaattttttatacttagtgttgagctgcattctcatctgtgttcccctgtttcatgaagtaaaatgaattcttggtttcag
  |  | |  || |  || || || |||||||||||||||||| |||||||||| ||| |||| |||   ||  | ||||||   | |||     |||||||     ||||  | ||| |   | |   |  | || |    || | ||  | ||  || |                                
TCTACTCAACGAGAGAAGCGACGTTTATAGCTTTGGAGTTCTTCTCATGGAGATGATCACTGGGAGAGATCCAGTCGATTACTCACGACCTTCGGCAGAGgtaaagaatctctagtttctctca-tcgattcttagatttgctcgc-tcgatcttttccag--------------------------------

upper sequence: Vv16s0050g01130.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ36811 (Selaginella moellendorffii), 5'ss of exon 6
AATTTTGACGGATAAGAGTGATGTCTATAGCTTTGGAGTTCTTATCATGGAGATAATCTCTGGTAGAACCCCTCTAGATTACGGGCAACCCCAATCAGAGgtcgctgatcttaaattttttatacttagtgttgagctgcattctcatctgtgttcccctgtttcatgaagtaaaatgaattcttggtttcag
  |  | |  || |  || || || |||||||||||||||||| |||||||||| ||| |||| |||   ||  | ||||||   | |||     |||||||     ||||  | |||||   | |   |  | || |    |||| ||  | ||  |  |                                
TCTACTCAACGAGAGAAGCGACGTTTATAGCTTTGGAGTTCTTCTCATGGAGATGATCACTGGGAGAGATCCAGTCGATTACTCACGACCTTCGGCAGAGgtaaagaatctctagtttttctca-tcgattcttagatttgctctc-tcgatcttttctag--------------------------------