1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGATCACCGAAGAGCAGCTGAAAGCATCTGCAGCCCAACAGCAGTCACAAACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaattctcacacctctctctctttctctcccctctatggctaccttataacacaattaccaccag
species | Vitis vinifera |
transcript | Vv16s0050g00800.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAG GTGCTGTTCAAGAAAGTGCTACTGCAATTCCTCCATCCCAGAACCCCAAAAEST: gi|110375864|gb|EC940884.1|EC940884
genomic: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaatt ... ttaccaccagGTGCTGTTCAAGAAGGTGCTACTGCAATTCCTCCATCCAAGAACCCAAAAA
EST: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAG GTGCTGTTCAAGAAGGTGCTACTGCAATTCCTCCATCCAAGAACCCAAAAAEST: gi|77581466|gb|DV219665.1|DV219665
genomic: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaatt ... ttaccaccagGTGCTGTTCAAGAAGGTGCTACTGCAATTCCTCCATCCAAGAACCCAAAAA
EST: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAG GTGCTGTTCAAGAAGGTGCTACTGCAATTEST: gi|110387630|gb|EC952313.1|EC952313
genomic: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaatt ... ttaccaccagGTGCTGTTCAAGAAGGTGCTACTGCAATT
EST: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAG GTGCTGTTCAAGAAGGTGCTACTGCAATTCCTCCATCCAAGAACCCAAAAAEST: gi|351026337|gb|FQ428349.1|FQ428349
genomic: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaatt ... ttaccaccagGTGCTGTTCAAGAAGGTGCTACTGCAATTCCTCCATCCAAGAACCCAAAAA
EST: AACACCCTCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAG GTGCTGTTCAAGAAGGTGCTACTGCAATTTCCTC-ATCCAAGAACCCAAAAEST: gi|351025830|gb|FQ427842.1|FQ427842
genomic: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaatt ... ttaccaccagGTGCTGTTCAAGAAGGTGCTACTGCAATT-CCTCCATCCAAGAACCCAAAA
EST: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAG GTGCTGTTCAAGAAGGTGCTACTGCAATTCCCCCATCCAAGAACCCAAAAA
genomic: AACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaatt ... ttaccaccagGTGCTGTTCAAGAAGGTGCTACTGCAATTCCTCCATCCAAGAACCCAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATCACCGAAGAGCAGCTGAAAGCATCTGCAGCCCAACAGCAGTCACAAACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGgtttgtaattctcacacctctctctctttctctcccctctatggctaccttataacacaattaccaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA