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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGgtgaatcaagttaccaattgttgatccaacaatctgaagtgtagctgctttttattgatttttctattatttgctttatttcaaactttgttcaccttttttctcacaaaccatatttcctgtacag

Basic information

species Vitis vinifera
transcript Vv16s0050g00770.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 7
TTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGgtgaatcaagttaccaattgttgatc-caacaatctgaagtgtagctgctttttattgatttttctattatttgctttatttcaaactttgttcaccttttttctcacaaaccatatttcctgtacag
||||||||||||| ||| ||||||||||||  |||||||| ||||| ||||| || ||||||||||| || ||||||||||||||||||||| ||||||||| ||  |||| | | |||  ||||  |||   |   || | ||  |  ||  ||    || |  | |  |    | ||| ||  |  |     ||||||| | |   ||                  
TTCAAGAATATGGGCAATTTGGTGAACTAGTTATTCGTAGTTATACTCAACAGATTTTGTCAGGGCTTGCTTATTTGCATGCTAAAAATACTCTCCATAGgtaaactaagtcatctattcatgatttcaatgtttaaaactttaatttattgcta--agttctgatgtagtgatgtctatctctgaaat-----accttttatttgtgaag-----------------

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G30100.1 (Glycine max), 5'ss of exon 6
TTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGgtgaatcaagttaccaattgttgatccaacaatctgaagtgt--agctgctttttattgatttttctattatttgctttatttcaaactttgttcaccttttttctcacaaaccatatttcctgtacag
||| ||||||||| ||| ||||||||||||  |||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||||||| ||||||||| ||  || | | | |||  ||||   |   | | ||   |  || || |  | | |  |  | |  | || | || ||| | ||| |   || |  | |                            
TTCGAGAATATGGGCAATTTGGTGAACTAGTTATTCGTAGTTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTGCATGCTAAAAATACTCTCCATAGgtaaactaaatcatctattcatgatttcaatgtttaaaactttaagttgttgctaagttctgatgcagtgatgt-ctatatctgaaattgcatttatttgtgaag------------------------

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 6
TTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGgtgaatcaagttaccaattgttgatccaacaatctgaagtgtagctgctttttattgatttttctattatttgctttatttcaaactttgttcaccttttttctcacaaaccatatttcctgtacag
||||||||||||| ||| ||||||||||||| |||||||| ||||| |||||||| |||||||| || || ||||| |||||||||||||||||||| ||||  |   ||| ||   ||  |  |  || | | |||| | || ||||||  |  | ||      |||| ||  | || |||| | |      |  | | |       ||    ||||| |||| ||
TTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGgtagacagagtcacttgttcatt-tttaaaactttgaatttta-ctgcttcctcataatg-----attaatttttatacttcagagtcctgatatatatctatcacttaattgcatttcttgtaaag

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 5
TTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGgtgaatcaagttaccaattgttgatccaacaatctgaagtgtagctgctttttattgatttttctattatttgctttatttca-aactttgttcaccttttttctcacaaaccatatttcctgtacag
||||||||||||| ||| ||||||||||||| |||||||| | ||| |||||||| |||||||| || || ||||| |||||||||||||||||||| |||| ||   ||| ||   ||  |  |   | || || || | |  |||||   |  | ||  ||     ||||  | || | || |    || |     | | || |  | |    ||||| |||| ||
TTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTTTACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGgtaaacagagtcacttgttcat--ttttaaaaccttaaattttactgctgcctcataatgatta----attttttatactccagagtcctgatatatatctatcacttacattgcatttcttgtaaag